Transcript Information: S_Transcript_272865.p1


Annotated TAIR IDAT5G53110.1
Annotated Gene NameRING/U-box superfamily protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:21529022-21533008 | Forward length=382
E-Value1E-32
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.222201943273
Replicate 24.0563873177494
Replicate 33.8870340624629
Condition 2: 8 Hour
Replicate 13.4426639076986
Replicate 26.922231193458
Replicate 33.9190571829786
Condition 3: 24 Hour
Replicate 15.7795880087222
Replicate 24.8783092182272
Replicate 36.1075802595348


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_272865.p1 GENE.S_Transcript_272865~~S_Transcript_272865.p1 ORF type:5prime_partial len:223 (-),score=18.88,zf-RING_2|PF13639.2|8e+03,zf-RING_2|PF13639.2|3.6e+03,zf-RING_2|PF13639.2|6.3e+02,zf-RING_2|PF13639.2|2.2e-12,zf-RING_11|PF17123.1|1.2e+03,zf-RING_11|PF17123.1|5.7e-09,zf-rbx1|PF12678.3|4.7e+03,zf-rbx1|PF12678.3|2e-06 S_Transcript_272865:45-713(-)
CTAGGGGGTGCAAATTATAGCGTTATGTCTAGTTTTTCAAAGCGAAATAAGGAGGTTTTGTCGAAGTGTCAAGACTGTGGTTCAATTGTGGTGTCAAGTGGAATGTATATAGTTGATGTGGTTGATGAACTTCGACTTATATGGATTCAACCTGATTGTTCGCAGTGTTATATTGGTGGTGGAAAATGCGGGTTAAAAAGAAGTTCTGGTTCTAAAGTTGTATGCACAGGAATTTCAGTGACTTCACCCTATGCCTTCATCTTTGCATTCATTGTGCCGGTGATTCTGTTCATGCTGGGTTCATTTTGCTTGATTTGCATAAAGGACAACCACCACCACCACCACAACACAGATTGGACAACAAGCGGAACTCATCTATTAGAGCTAATAGGTATGCCATCAATTCAGCACCAAGCAAATCGTGGGCTTGATCAGCTTACCATCGACTCATACCCGGTGGTTGTACTTGACGAGACAAAGATTCTACCTAGTCAGCATTACAACCATGACAATAGCTGTTCAATATGTTTGTCGGACTACCAGCCTGAGGAGTCCCTAAGAACTTTGCCAGGTTGCCACCATTGCTTCCATGCTTCTTGTATCGATCAATGGCCTCGTTTGAAGGCCATCTGCCCTGTCTGCCGCCTTTCCCTGCCTCCCTTAAGTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_272865.p1 GENE.S_Transcript_272865~~S_Transcript_272865.p1 ORF type:5prime_partial len:223 (-),score=18.88,zf-RING_2|PF13639.2|8e+03,zf-RING_2|PF13639.2|3.6e+03,zf-RING_2|PF13639.2|6.3e+02,zf-RING_2|PF13639.2|2.2e-12,zf-RING_11|PF17123.1|1.2e+03,zf-RING_11|PF17123.1|5.7e-09,zf-rbx1|PF12678.3|4.7e+03,zf-rbx1|PF12678.3|2e-06 S_Transcript_272865:45-713(-)
LGGANYSVMSSFSKRNKEVLSKCQDCGSIVVSSGMYIVDVVDELRLIWIQPDCSQCYIGGGKCGLKRSSGSKVVCTGISVTSPYAFIFAFIVPVILFMLGSFCLICIKDNHHHHHNTDWTTSGTHLLELIGMPSIQHQANRGLDQLTIDSYPVVVLDETKILPSQHYNHDNSCSICLSDYQPEESLRTLPGCHHCFHASCIDQWPRLKAICPVCRLSLPPLS*

Click here to download the sequence:
Link to NCBI Protein BLAST