Transcript Information: S_Transcript_272878.p1


Annotated TAIR IDAT3G21000.1
Annotated Gene NameGag-Pol-related retrotransposon family protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr3:7363921-7365138 | Forward length=405
E-Value7E-07
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.2028475134545
Replicate 20.87253970001471
Replicate 32.813298724617
Condition 2: 8 Hour
Replicate 10.24096486234049
Replicate 21.6431301260816
Replicate 30.84299962279587
Condition 3: 24 Hour
Replicate 10.61708710425407
Replicate 22.176750264395
Replicate 30.99748198212324


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_272878.p1 GENE.S_Transcript_272878~~S_Transcript_272878.p1 ORF type:3prime_partial len:177 (-),score=22.34 S_Transcript_272878:3-530(-)
ATGATTTATTGGAACTGTAACGGAAAGGGCATCCCAAAAAAGTGTCCAAAACTCAGAAAGAAGGGAGTCAGGTCTAGTAACAGTGGCCAACGGGAGAGTGATAGTGACGCTTCGGTTAATTCTGCTATAGAAGAGTCACGGTTACAGGATGCTTTGATCTTGAGTGTTGATAGTCCAGTTGAGTCCTGGATATTAGATTCAGGGGCATCATTCCATTCTTCACCATGCAAGGAGTTGTTTAAGAACTTTCAGACTGGAAAGTTCGGTAGAGTTTATCTGGCTAATGGTAAACCTCTAGAGATTACTGGGAAGGGGGATGTAAGGATTAAAACTTCAAGTGGGAGCATCTGGGAGCTGCAGGATGTTAGGTTCATACCGGGACTAAACAAAAATCTGATTTCGGTGGGGCAGTTAGATGCCAGTGGGTACAGAACTGTGTTCAGTGAGGGTGCTTGGAAGGTTTCTCGGGGTGCTATGGTGATTGCACGGGGTCCCAAGACAGGCACATTATACACTACTGCAGGGTGT

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_272878.p1 GENE.S_Transcript_272878~~S_Transcript_272878.p1 ORF type:3prime_partial len:177 (-),score=22.34 S_Transcript_272878:3-530(-)
MIYWNCNGKGIPKKCPKLRKKGVRSSNSGQRESDSDASVNSAIEESRLQDALILSVDSPVESWILDSGASFHSSPCKELFKNFQTGKFGRVYLANGKPLEITGKGDVRIKTSSGSIWELQDVRFIPGLNKNLISVGQLDASGYRTVFSEGAWKVSRGAMVIARGPKTGTLYTTAGC

Click here to download the sequence:
Link to NCBI Protein BLAST