Transcript Information: S_Transcript_275113.p1


Annotated TAIR IDAT1G24050.1
Annotated Gene NameRNA-processing, Lsm domain
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:8507057-8508439 | Forward length=188
E-Value9E-10
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.20408743278513
Replicate 20.016919317145333
Replicate 30.084859215108592
Condition 2: 8 Hour
Replicate 10.3924918463276
Replicate 20.25734488465943
Replicate 30.39231621358861
Condition 3: 24 Hour
Replicate 10
Replicate 20.034760447202987
Replicate 30.096710292964402


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_275113.p1 GENE.S_Transcript_275113~~S_Transcript_275113.p1 ORF type:complete len:1304 (+),score=282.30,PCNA_N|PF00705.14|0.0054,PCNA_N|PF00705.14|26,PCNA_N|PF00705.14|0.25 S_Transcript_275113:572-3913(+)
ATGGCCGAAACTTCAAGAGAACAATCTGTGTCCGAATCCTTAAACGGGTCTACAATGGCCAAAACTTTAAGAGAACAGTCTGTGCCCGAATCCTTAGACAGGTCTGCAATGGATGCCACTTCTGTGATTGATACTTCAGGAACTTCTTACAGTTTCAGGTTTCAAATACACCCTGCTAGTAAACTGAAGCATGCCCTTGAAGTTCTGAGTGACGACGATTTTAATCCTCAAGGTTCTGGCCTTATCAAAGTGGGGCCTAATGGAGTGGAGATTAAAGCTTTGAACATTGAAACAAGGGTCCTTTGTTGTCTGGAAATGGGAGCTTCTGGTTTCGTCAACTTCTCTTACAATGAGCCTTTTAACAAGATGGTTGACTTGAATAAGATATGCAACGATCTTAACCTTTGTGATGATGGCAGTGTGATCAACATTCAGCATGCTTATGGGTCTGATGAGCTTACCTTCACATTTGGAGAATCTTGTCCTAGAGAGTTTGCTGTGGAATTGGCTGAAATGAATGATGACTTTGAAAAGGTTCCACTCATCACCCATACATATGAGTCTGTTATAAACTGTGAAGCTTTGAGGGAGATAATAAATCATGTAGAGGCTAGTACATCTAAAGCTGTTTTTTTTAACATAGCTGATGGCATTATGTCCATCAAAATTGAAGATCAAGAATGGACTTGTGACTATGAGAAGAAAGTTTCAGCTAGGGTCATAAAACCATGGCAGAAGCATCGTGCACGGTTCCCTTGGCTTCACTACAAATCATTGAGGAAGGCATCATATCTGGATCGACGGGTTCTTTTGTGCCTAATTACAGATCCGCCCCATTGCATGATGTTGCGGTTCAGCTTTCATGACCTAGGGCATCTGGCGTTTGTAAAGGGAGCAGCTGTGATCCAGCCTAGTGTTGTTCCAGGAATGAAAGAGAAGCCAACCCACAGCTTTAGCTTACAACTATACCCTGCTAGCATATTGACAAACGCACTGAATGTTCTAAGCTATCTCTGTTTCAAGCGACATGATTCTGGCATTATCACAGTAAATCCCTCAGAAATGGAGATTGTTACAGGGCTGAATGAAGGAATGAAGATCATAGGTGGTCTGTCCTTGACAGATATTGGTTCCATCAGTTTCAATTGCTACAAGCCAATCAACATGAAGATTGTCAATCTTACTGATCTCTTCCTTGATGTTTCTGTCGCTCATTATGATGATATGATCGAAATTCACCATGTTGATGAGTCTGATGAGCTCCAAATTGTGCTTGGAAAAGTTCTTCCTAAAAGGATTGGTGTGAAGTTACATGACAAGAGTTCTCACTTTGGAGATATTCCCAGGGTCGGCTTTGCAATTAGCATTATTATACCGTCTGATGATCTGAGGCAGATCATTCAACATGTTGAAGCTAGCATATCTAAATCTGTTTCATTTCATGTAGCAAACATGAATGTGTTTATCAAAGCTGAAAGAAAAGTATGGAATTATGAGTATAATTACACGGATCCTCAAGCAGCAGGGAATGATTATCATGTGGGCTTCGAGATGCTTATGCCCCGGTATCCTCACTGTGTGTCATTGAAAGAGGCGTCATGGCTGGCTGATCGGTGTTTCGTGGGCCTTGTTACAATTCCTTTAAACTGTGTAGTTTTGCGGTTCAACATTGCAAAACAAATTCATATGATGTTTGTCATGGGAGCAAATTTGAAGCTCCCAAAATTCAGAAGTTTGGAAAATAGCCCAGAACCTTCAGAACAGGACTCTGAGGCTTTAAAAGACAGATCCATTGCTGAACTGTCAAACAGTGTATCAAAAGATGAACTATCTTCAAAGAAGAGCATGGAGCCTTCAACAGGTCAGCATGACACTCCACCGAATCCATCAAAAACCAAACGTCTGAAAGGTCCAGTTAAAACTAGACATACGACAAAGAATCGAAAACCTTCAAAACATCCCAAACCAAACAACAGGTTTAGTTTCCCAGCTGAACCTGAAACAGGAGAACAACGAAGGAGCTATGATATTGATGATGACAATAAAACTGACCCAACCATGGACAACCCTTTGAATGAGAACCCAGAACCCTTAAACCAGGACCAGTTACCTAAAATACATACATCTGAAACTTCAACTGATCCATCAATTGTCATATCTCCTAAAGAAAATGGTCCAGCCACCGCTGAACCCTCAGAAGAGGATTCAGAGTCTCAGATGCAAAACCCTGAAGCTTTGCAACTTCCACACACTGAAACTTCAGGAGATAACAGTAAAGACTTTGTTGTTGGGTCCATTCTTGCAATCAAAACCACTTTAGGAGAGGAATTTGAAGGCCGAGTTATCACCTTCGACCGACCCTTCAACATCCTTTTGCTTCAAGAGGGTTCAGAATCGGGACCAAATAAAAAAAACATAAGGCTTCTGAACACCAATTACATTGAGGAGTCTACCTTATTGCACCAATCAGAAGATCCTCTTGACCTCAAGACCTTCAATCTGAAAGCTTTATCTAAGACTAAGCTGAAAGAAGCAATCGAAGCTCTCAGGGATGCCAATTTCAATGAGCAAGGCAAGGGGGTAATTGAAGTTGGGCCTGAGGGATTGCAGATTACAGTCTCGAATATTGGATCAAAGGTTGTCGCATATCTACACTTGAAGGCTACGGGTTTTATCACATTCAATTACCAGAAGATAGTTGATCTGAATCAGATAGCCCAAAGTCTTTCGGTTGCTTCGGAGAATGATTCAGTTGCTATTCACCATGTTCATGGCTCGAATGAGCTCTCCTTCATGTTTGGAAAACGTCCCAGCAGAAAGTTTCCTGTAGAATTGCATGAAATTAATGGTAAGTTCGAGAAGGTTCCTGACATTACCTATGCTTGTGAAGCCTCTGTACCATCTGGAGTTCTGAGACGCATCATTGAAGAAGTTGAAGCCACTGCAACAAAAAATGTTAGATTTTCCATCTCAAAAGGCAATTTAGCTGTCAATGATAAGAAAGTTTGGACGTTTAAGAGTGCCATAAAGGACAGTAGGGCTAAGCTACGCAAGAGGCATAATACCAGTTTCAAGTGGCTTCACTGTGAGTCACTTGGGAAGGCATCTGCAGTAGCAGAAAAGGCTGTTTTGTGTCTTACCATGGAGCCCCCCAAGTGCATGATGATGTGTTTCCACATCCGAGACCAGGGGGATCTTGTCTACATCATGGGACATAACCTGATCCTTCCCAAATTTGCACTAGACAAGCAAACGGGGAGCTTTGGTGCTGAAGAATCAATTGTGGAACCAGGAGAGCAAAGCAGCAGCTCAGGTACTGGTGAACAAAACTCGAAACCATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_275113.p1 GENE.S_Transcript_275113~~S_Transcript_275113.p1 ORF type:complete len:1304 (+),score=282.30,PCNA_N|PF00705.14|0.0054,PCNA_N|PF00705.14|26,PCNA_N|PF00705.14|0.25 S_Transcript_275113:572-3913(+)
MAETSREQSVSESLNGSTMAKTLREQSVPESLDRSAMDATSVIDTSGTSYSFRFQIHPASKLKHALEVLSDDDFNPQGSGLIKVGPNGVEIKALNIETRVLCCLEMGASGFVNFSYNEPFNKMVDLNKICNDLNLCDDGSVINIQHAYGSDELTFTFGESCPREFAVELAEMNDDFEKVPLITHTYESVINCEALREIINHVEASTSKAVFFNIADGIMSIKIEDQEWTCDYEKKVSARVIKPWQKHRARFPWLHYKSLRKASYLDRRVLLCLITDPPHCMMLRFSFHDLGHLAFVKGAAVIQPSVVPGMKEKPTHSFSLQLYPASILTNALNVLSYLCFKRHDSGIITVNPSEMEIVTGLNEGMKIIGGLSLTDIGSISFNCYKPINMKIVNLTDLFLDVSVAHYDDMIEIHHVDESDELQIVLGKVLPKRIGVKLHDKSSHFGDIPRVGFAISIIIPSDDLRQIIQHVEASISKSVSFHVANMNVFIKAERKVWNYEYNYTDPQAAGNDYHVGFEMLMPRYPHCVSLKEASWLADRCFVGLVTIPLNCVVLRFNIAKQIHMMFVMGANLKLPKFRSLENSPEPSEQDSEALKDRSIAELSNSVSKDELSSKKSMEPSTGQHDTPPNPSKTKRLKGPVKTRHTTKNRKPSKHPKPNNRFSFPAEPETGEQRRSYDIDDDNKTDPTMDNPLNENPEPLNQDQLPKIHTSETSTDPSIVISPKENGPATAEPSEEDSESQMQNPEALQLPHTETSGDNSKDFVVGSILAIKTTLGEEFEGRVITFDRPFNILLLQEGSESGPNKKNIRLLNTNYIEESTLLHQSEDPLDLKTFNLKALSKTKLKEAIEALRDANFNEQGKGVIEVGPEGLQITVSNIGSKVVAYLHLKATGFITFNYQKIVDLNQIAQSLSVASENDSVAIHHVHGSNELSFMFGKRPSRKFPVELHEINGKFEKVPDITYACEASVPSGVLRRIIEEVEATATKNVRFSISKGNLAVNDKKVWTFKSAIKDSRAKLRKRHNTSFKWLHCESLGKASAVAEKAVLCLTMEPPKCMMMCFHIRDQGDLVYIMGHNLILPKFALDKQTGSFGAEESIVEPGEQSSSSGTGEQNSKP*

Click here to download the sequence:
Link to NCBI Protein BLAST