Transcript Information: S_Transcript_275645.p1


Annotated TAIR IDAT3G21000.1
Annotated Gene NameGag-Pol-related retrotransposon family protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr3:7363921-7365138 | Forward length=405
E-Value0.0006
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.29806561383402
Replicate 20.52950694938036
Replicate 30.1475418886688
Condition 2: 8 Hour
Replicate 10.34120624507413
Replicate 20.32215462041206
Replicate 30.37515891784767
Condition 3: 24 Hour
Replicate 10.24466269509465
Replicate 20.47140728078803
Replicate 30.24213162628911


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_275645.p1 GENE.S_Transcript_275645~~S_Transcript_275645.p1 ORF type:complete len:625 (+),score=129.55,UBN2|PF14223.2|2.2e-32,UBN2|PF14223.2|4.5e+02,UBN2_2|PF14227.2|2.6e-16,UBN2_2|PF14227.2|2.2e+03,zf-CCHC|PF00098.19|5.9e-06,zf-CCHC|PF00098.19|0.0024 S_Transcript_275645:136-2010(+)
ATGAATAATCCTCCCAGGAGAGAAGAAGGTTTCTCAAGCTCTAGACCACCATATTTCAATGGTGATCATTATTGTTGGTGGAAGAAACAAATGGAGATCTATGTAGAAGCTGAAGATTCACAGGTTTGGGACATCATTGAGTGTGGTCCCTTGACCATCATTCAAAAAGATGATAAAGGAAAGGAAGTCATCAAGCCTAGGTCGATGTATGATGAAAACGACCGAAAGAAGGCGGAGAAAAATGCCAAAGCCATGAAATTACTCTACTATGCTCTTGGTCCGGATGAGTATCAACGAATCGTTGGATGTGCAAATGCCAAAGAAATATGGGATACTCTCAAAGTTACCCACGAAGGAACAAATCAGGTGAAACAATCTAGGATTGAACTCCTAGTTAGAGATTATGAGCTCTTTGCTACGTTGAAAGATGAGTCCATCAAAGAGATGTACACAAGGTTCACTAACATAGTTAATGAACTTAAATCTCTTGGAAAAGGCTTCACCACTGAAGAACTTGTGAGGAAGATATTGAGAATACTTCCAGCCACTTGGATTCCCAAGGTCACGGCTATTCAAGAAGCACATGATCTTTCCAAACTTCCTCTCAAAGAACTCATAGGAAATTTGGAAACTCATGAGCTCATGATCAATGCCTTCAAAAAACCCACTCCCAGCAAGGACAAGGGTATTGCTCTCAAAGCTGAGCATGAAAGTGATCACTCAGGTCTTGACGAAGAAGATATGGCTATGATCACAAGGAAGATCCGAAAGTTCTTCAGAAAAGGGAAACAGTTCCCTCGGAAAGGTGGTTCCAGCAAAGGTCCAAGCAACTCCAGAAACAACACAGATTCATGCTACAAATGTGGAAAACTTGGACATCACATCAAGGATTGTCCACTTTGGGAAGAAGAGAACCAGAAGAAGCAATTTGGAGGAAACAGGTTCCAGAAGCAGTCAAAGAATGTCCAGAAAGACTTCAAGAGAGCCTTGATGGCTGCATGGGGAGACTCGGACAGCGAGGATTCAGATTCTCAAGAGGCAAACTTGTGTCTTATGGCACAAAGTGACTCCGAGGATGAACAATCCAATTTGCAAGTAAGTATGGAACAACTTTTACTTAATGCACATAAGTTGAAAAAGAACAATTTGGTTGATATGATAAATGTTTTGTTTGATGAGTACATGGAAGTTAGCACTGAAAGAGATTTGCTTAATGATGCTATGTATAGCTTGAAGTTAGACTTTAAAGAACTTAAGCAAGAGAACTTAAAAATCCAATGTGCTAATCAAGATTTACTTGCTCAAATTGATCATTTGGAGGAAACTGGTTCTGAGTATCAGGACACTATCTCTACTTTGACTATTGAACTTGACACACTTAAATCTTGCATGAATGTCAGTGAACCTGTTTCTGTTTCTATTTCTGCTGATACCTCTATGAGTTTTGAGTCTATGAACTTGGAATTAAACAATGCTAAAGTAGAACTTGAGACTCAACTTGACAAGTATAAGCAATTTCAACTTAAGCTAGATGAAACTCTACATGATCTCACTAGACTTAAGAAATGGGAGAACTCTTCCAAAGCTTTAACTTGGTTAAATGAACATCATAGTAGGTACAAACAAGGACTAGGTTACAAGAAATATAAAATGCCTTACAATCCTAGGAGCAAGTATGTGGACTTGCCTTGTAATCGTCTGTGTTTTCATTGTGGTAACAACGGTCATTTTAGAAGAGAATGTTTGGCTAGGATGAAATCCTATGAAAGAAACGGCTTACATGTTAGACAAGTATGGGTTGTGAAGAACACCTTATTTCATGGTACTAAAGAATCGGGACCCAAGCAAGTTTGGGTTCCCAAGTCTAACCATTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_275645.p1 GENE.S_Transcript_275645~~S_Transcript_275645.p1 ORF type:complete len:625 (+),score=129.55,UBN2|PF14223.2|2.2e-32,UBN2|PF14223.2|4.5e+02,UBN2_2|PF14227.2|2.6e-16,UBN2_2|PF14227.2|2.2e+03,zf-CCHC|PF00098.19|5.9e-06,zf-CCHC|PF00098.19|0.0024 S_Transcript_275645:136-2010(+)
MNNPPRREEGFSSSRPPYFNGDHYCWWKKQMEIYVEAEDSQVWDIIECGPLTIIQKDDKGKEVIKPRSMYDENDRKKAEKNAKAMKLLYYALGPDEYQRIVGCANAKEIWDTLKVTHEGTNQVKQSRIELLVRDYELFATLKDESIKEMYTRFTNIVNELKSLGKGFTTEELVRKILRILPATWIPKVTAIQEAHDLSKLPLKELIGNLETHELMINAFKKPTPSKDKGIALKAEHESDHSGLDEEDMAMITRKIRKFFRKGKQFPRKGGSSKGPSNSRNNTDSCYKCGKLGHHIKDCPLWEEENQKKQFGGNRFQKQSKNVQKDFKRALMAAWGDSDSEDSDSQEANLCLMAQSDSEDEQSNLQVSMEQLLLNAHKLKKNNLVDMINVLFDEYMEVSTERDLLNDAMYSLKLDFKELKQENLKIQCANQDLLAQIDHLEETGSEYQDTISTLTIELDTLKSCMNVSEPVSVSISADTSMSFESMNLELNNAKVELETQLDKYKQFQLKLDETLHDLTRLKKWENSSKALTWLNEHHSRYKQGLGYKKYKMPYNPRSKYVDLPCNRLCFHCGNNGHFRRECLARMKSYERNGLHVRQVWVVKNTLFHGTKESGPKQVWVPKSNH*

Click here to download the sequence:
Link to NCBI Protein BLAST