Transcript Information: S_Transcript_276332.p1


Annotated TAIR IDAT1G21880.2
Annotated Gene Namelysm domain GPI-anchored protein 1 precursor
Annotated Gene Symbol(s)LYM1
Annotation TypeHomolog
Chromosome Positionchr1:7680689-7682526 | Forward length=416
E-Value4E-61
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.44781492463044
Replicate 20.74249772549329
Replicate 30.70933600321541
Condition 2: 8 Hour
Replicate 11.3328368948208
Replicate 21.7746899161322
Replicate 31.998360712967
Condition 3: 24 Hour
Replicate 10.52511739160082
Replicate 20.87168506062875
Replicate 30.60629914435375


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_276332.p1 GENE.S_Transcript_276332~~S_Transcript_276332.p1 ORF type:5prime_partial len:416 (+),score=9.93,LysM|PF01476.16|21,LysM|PF01476.16|1.3e+03,LysM|PF01476.16|1.4e-05,LysM|PF01476.16|1.5e+03 S_Transcript_276332:2-1249(+)
GTGACACTGTATAATACACAATTAATGATCCCAATTCAGCCATATATCGAGTTTAGACAAAACATGTCACAACCAAAACTACTACTCCTCCTCCTAAACATCCTACTCTTATTTTCTCTACCAATCTCAAATGCCAAATCTGTGATAGAGCCATGCAAAGCCTCAAATCCATGCTATTCTCTAGTATCCTACGTCCTCCCATGGGATTCGGAGCTCTCGGAAATCGCGTCTCGGTTCCAAGTGAACATCTCATCCCTTCTAGGCACCAATTTTCTAGACCCAAAAACACCAGGCACTCAAATTCTGCCTAGACACACGGCCGTGAAGGTGCCCGTGTCATGCTCGTGTGTTAGCGGCATTAGACGGGCACCCGTGACCTACACGATCCGAGCACCGGACATGTCCCTTGAGTCCATATCCGAGGGATTCGGAGGGCTTGTAAGTGGGGAACAAATTCGAAGTGTTAATAGCAAGATTAAGGGGTTTATTGATGGACGTAAGATTTTGGTGCCATTGCCTTGCACTTGTTTTGATAATGCTAACAATGGGTTACCTTGTGTGTATTTGTCGTATGTGGTGGGAAAAGGAGAGGGGTTAAGTGGAATTGCGGCTAAGTATGGGACTACGGTTCATGAGTTGGAGAGTGTTAATGAAATTGCTCAAGAGAATGTTGATAATGGTGATATATTGGCTGTGCCTTTGCCAGCATGCTCCTCAGCAAAACTAGATTGGAACAACGATACCCTAATACTCCCTAACAATACCTATTCTCTTCGTGCAAATGACTGCATTATTTGCAGATGTGGACCAAATGATATGAATTTGCAGTGCTCAGTCTCTGGAATCGGGACTTCTTGCTCTCAAATACAATGTAAAGGGTCTAATCTATTCATTGGCCAAGTGTGTGAAACTCCGGAGACTAGTGGTTGCAATGTGAGCAAATGCATATATCGTGGTTACTTTGGTGACAAAGTATTCAAAAGCTTAGAGACGAAGCCTCACATTCAGTGCTTAGGTCAAAACCATAGTTGTACAGCCATTCAACCAATAACATACCCACAATGGAACTCTTCTTTTAATTCATGTACATCTTCATCTCCGCCTACAGTTGAAATTGACTCGTCTACTCATCGGGGAACAAAAGATCTCAAGCATTATTCTAGCCAAGGATTGTCCAATATTCAACCTAACCTTATGTTGTACTTGATCAATTCAGTTTTTCTAACCTATGAATATCTTGTCTTATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_276332.p1 GENE.S_Transcript_276332~~S_Transcript_276332.p1 ORF type:5prime_partial len:416 (+),score=9.93,LysM|PF01476.16|21,LysM|PF01476.16|1.3e+03,LysM|PF01476.16|1.4e-05,LysM|PF01476.16|1.5e+03 S_Transcript_276332:2-1249(+)
VTLYNTQLMIPIQPYIEFRQNMSQPKLLLLLLNILLLFSLPISNAKSVIEPCKASNPCYSLVSYVLPWDSELSEIASRFQVNISSLLGTNFLDPKTPGTQILPRHTAVKVPVSCSCVSGIRRAPVTYTIRAPDMSLESISEGFGGLVSGEQIRSVNSKIKGFIDGRKILVPLPCTCFDNANNGLPCVYLSYVVGKGEGLSGIAAKYGTTVHELESVNEIAQENVDNGDILAVPLPACSSAKLDWNNDTLILPNNTYSLRANDCIICRCGPNDMNLQCSVSGIGTSCSQIQCKGSNLFIGQVCETPETSGCNVSKCIYRGYFGDKVFKSLETKPHIQCLGQNHSCTAIQPITYPQWNSSFNSCTSSSPPTVEIDSSTHRGTKDLKHYSSQGLSNIQPNLMLYLINSVFLTYEYLVL*

Click here to download the sequence:
Link to NCBI Protein BLAST