Transcript Information: S_Transcript_27701.p2


Annotated TAIR IDAT3G10650.1
Annotated Gene NameBEST Arabidopsis thaliana protein match is: nucleoporin-related (TAIR:AT5G20200.1); Has 61042 Blast hits to 31782 proteins in 2093 species: Archae - 202; Bacteria - 16480; Metazoa - 16017; Fungi - 12552; Plants - 1653; Viruses - 629; Other Eukaryotes - 13509 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr3:3325562-3330819 | Reverse length=1309
E-Value3E-09
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.2301397683112
Replicate 24.3139532654359
Replicate 33.8121856709119
Condition 2: 8 Hour
Replicate 14.6463140914424
Replicate 24.2494014176017
Replicate 33.3343225303881
Condition 3: 24 Hour
Replicate 15.4917304864622
Replicate 23.6717907023133
Replicate 32.5362949681122


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_27701.p2 GENE.S_Transcript_27701~~S_Transcript_27701.p2 ORF type:5prime_partial len:179 (+),score=56.84 S_Transcript_27701:3-539(+)
AAGGTGGAAGAAACTAGCATGAAAAAGTTTGAGGTTTCCTCTGATAATGTGGCTACCCAAAATGGTGCTGAGGCTATAGTGCAAACTTCTCGTTCATCAGATAATGACAATACCAAGCATATGGACTCTGTAAAATCACAGTCAGGTCCTGATCAACCACTAAAAAAGCGAGCATTTCAAATGAGTGCTCATGAGGATTTTCTTGAGCTGGATGATGATGTACATGCTAATGGGGTTGTTTCAACTCCTTCGAGTGAAGGGGCACAAGGCACTGATGTGCCTAAACTATCAGCTGGCATGCCTAATGGCCCTCCGCAGAGTGAAGCAATTGGAGTAGGGAAGCCATCAGTTCCAGAGCAAAAACCTTCAGGAGCTTCTTTGTTGACCAAGAAGGTATCGGAGCCTCTGTCAGATCTGTCTGCGCCAGCTGGTAAGGCTGCTGCTTTTACCTTCCCTGTAATGCCATCATCTTCTCCTGCAACTAGCCTGGCTTTGCAAGCAGCAGTCTCCACTCCTCCGTTCAACTTCGCAGTCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_27701.p2 GENE.S_Transcript_27701~~S_Transcript_27701.p2 ORF type:5prime_partial len:179 (+),score=56.84 S_Transcript_27701:3-539(+)
KVEETSMKKFEVSSDNVATQNGAEAIVQTSRSSDNDNTKHMDSVKSQSGPDQPLKKRAFQMSAHEDFLELDDDVHANGVVSTPSSEGAQGTDVPKLSAGMPNGPPQSEAIGVGKPSVPEQKPSGASLLTKKVSEPLSDLSAPAGKAAAFTFPVMPSSSPATSLALQAAVSTPPFNFAV*

Click here to download the sequence:
Link to NCBI Protein BLAST