Transcript Information: S_Transcript_27703.p1


Annotated TAIR IDAT3G10650.1
Annotated Gene NameBEST Arabidopsis thaliana protein match is: nucleoporin-related (TAIR:AT5G20200.1); Has 61042 Blast hits to 31782 proteins in 2093 species: Archae - 202; Bacteria - 16480; Metazoa - 16017; Fungi - 12552; Plants - 1653; Viruses - 629; Other Eukaryotes - 13509 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr3:3325562-3330819 | Reverse length=1309
E-Value2E-13
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 19.0638482467644
Replicate 28.9530160523249
Replicate 38.6422483097066
Condition 2: 8 Hour
Replicate 19.3234194381668
Replicate 29.2405461772784
Replicate 36.4359443251755
Condition 3: 24 Hour
Replicate 16.9650353158416
Replicate 27.2808863276672
Replicate 38.346425322466


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_27703.p1 GENE.S_Transcript_27703~~S_Transcript_27703.p1 ORF type:complete len:414 (+),score=108.46 S_Transcript_27703:1041-2282(+)
ATGGGGGGCACTGGTATTGAGAGCAGCACGTCCCCTTTTTCTGTTAGCAGTAGCGTACAGTTCGGCTCAATGACAGCACCATCAGTTTCACCTGGACCTTCTTTTCTGTTTGGATCTTCTTCAGTACCATCGACTACAGGTGCTTCTGCTTCAAAATCTACAGAGAGTTCAGCAGCCAAGTTAAATGAGATTGCTTTTGGCAGCACAACTAGCAGTCTTTTTGGCACCAAATCTTCTGTAACTGTCAATGGAGGAAATGACGTTTCTGGTTTGAATGCTTCAACCTTAAAATCTGCCAGTGGTGAGGCTCTAATAGCTGCCCCTGCTGCTAGCAATGGATCTATCTTCGGTTTTCAAGCATCATCATCTAGTGCTCCATTCTCAACCTCAACTCAGAGTTTCCCTAGTCCATTTCCTTCGCAAGCGCCATCTCCTATTTTTGGGTTGGGTACAACCACTGCCACTAACACTTTTAGCTCAAGCACTGCTTCAGCATCAACTTTGGGTGCCTCTTCGAGTTCATCTTTCAGCTCAAGCAGTAGTAGTGCCTCCAGCATGTTTGGCTCCAGTTGGCAGCCTTCAAAACCCACCAACACGAGTACCACATTTGGCTCAACGCCAGCATCAACTGGATTTTCGTTTGGAGCGACAGTCTCTGGGCCTTCAGTAGATAATAATAAGGCTCCTTCCGTTGTGTTTGGATCATCGACCCCAAGCTCTTCAGCAGCTGGTAACAGTGCAGGATTTGTGTTTGGAGCTGCCAGCTCATCAGCAGCTCCCATTTTCTCATTCTCCTCAGCTTCTTCAACTGCTCCTCCCTCTTCATCTCAGCCTGCATTTGGTAACACTAGCACTCCAGCATTTGCGTTTGGTTCATCTCCCTCGGGAAATAATGATCAGATGAGCATGGAAGATAGCATGGCAGAGGATTCTGTTCAGGCTTCGACACCTGCAGCTCCAGTGTTTGGTCAATCGCCAATTTCAGCACCTTCAGCGGGCTTTATGTTTGGTGCAACGCCTTCACCTGGTATTGGCAGTACAACAGCTCCACCAACAGCAAACTCATTTCAGTTTGGCAGCCAGCCTTCTCCAATGGCTCCTCAGAGCCCATCTCCATTTCAGCCTTCTGGTAGCGTGGACTTTAATGCCAGTGGGGCTGGGAGCTTTTCTTTGGGGACTGGTGGTGGTGACAAATCAAATCGTAAAATAGTGAAGGTGAAAGGCAGATTACGGAGAAAATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_27703.p1 GENE.S_Transcript_27703~~S_Transcript_27703.p1 ORF type:complete len:414 (+),score=108.46 S_Transcript_27703:1041-2282(+)
MGGTGIESSTSPFSVSSSVQFGSMTAPSVSPGPSFLFGSSSVPSTTGASASKSTESSAAKLNEIAFGSTTSSLFGTKSSVTVNGGNDVSGLNASTLKSASGEALIAAPAASNGSIFGFQASSSSAPFSTSTQSFPSPFPSQAPSPIFGLGTTTATNTFSSSTASASTLGASSSSSFSSSSSSASSMFGSSWQPSKPTNTSTTFGSTPASTGFSFGATVSGPSVDNNKAPSVVFGSSTPSSSAAGNSAGFVFGAASSSAAPIFSFSSASSTAPPSSSQPAFGNTSTPAFAFGSSPSGNNDQMSMEDSMAEDSVQASTPAAPVFGQSPISAPSAGFMFGATPSPGIGSTTAPPTANSFQFGSQPSPMAPQSPSPFQPSGSVDFNASGAGSFSLGTGGGDKSNRKIVKVKGRLRRK*

Click here to download the sequence:
Link to NCBI Protein BLAST