Transcript Information: S_Transcript_278043.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value2E-12
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20.22628502110272
Replicate 30
Condition 2: 8 Hour
Replicate 10.1093609759853
Replicate 20.34418228676502
Replicate 30
Condition 3: 24 Hour
Replicate 10.44810017416603
Replicate 20
Replicate 30.12934381746213


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_278043.p1 GENE.S_Transcript_278043~~S_Transcript_278043.p1 ORF type:3prime_partial len:195 (+),score=33.51,UBN2_3|PF14244.2|2.5e-15,Retrotrans_gag|PF03732.13|9.4e-08,UBN2|PF14223.2|4.4e-06 S_Transcript_278043:581-1162(+)
ATGATTACTGCCTGGTTGTTGAATATTCTATCAAGAGAAATAGCGGACAGTGTTCTCTACTCTACTTCAGCTCAAGAAATTTGGCAAGAGCTTGATGATCGTTATGGTCAAGCTACTGGCCCTAAATTGTATCAACTGCAGAAAGATATGTGTTCACTTTCTCAAGAAAGTACAAACATAGCTTCTTATTTTGCCAAATTCAAGGCTGTATGTGACGAGTTTAACACTTTGAGCCCCATGTCTGCTTGTACCTATGGTGTTGCTCAACAAATTCTTAAATTTCAACAGGATCAAAAAGTAGTTCAATTCTTGATAGGACTCAACAGTGACTACAACATCTCTCGTGGTAACATCTTAATGATGAAGCCTTTACCAAGTCTGGCCTCAGCTTATGGTTTATTGATTGCTGATGAGCAACAAAAGCAGATACAAGCACCTTCTCATTTTATTGACAACTCTGCCTCCATGCTTGCTTCTGTTCCTAAAGGCGTTTCTCATAGCAGTTTCAGACCTCAATTTTCTCCTAGGCCTCCTTTACAACAGTCAAATCCAAAGAAGAATATCATTTGTAATCATTGCAAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_278043.p1 GENE.S_Transcript_278043~~S_Transcript_278043.p1 ORF type:3prime_partial len:195 (+),score=33.51,UBN2_3|PF14244.2|2.5e-15,Retrotrans_gag|PF03732.13|9.4e-08,UBN2|PF14223.2|4.4e-06 S_Transcript_278043:581-1162(+)
MITAWLLNILSREIADSVLYSTSAQEIWQELDDRYGQATGPKLYQLQKDMCSLSQESTNIASYFAKFKAVCDEFNTLSPMSACTYGVAQQILKFQQDQKVVQFLIGLNSDYNISRGNILMMKPLPSLASAYGLLIADEQQKQIQAPSHFIDNSASMLASVPKGVSHSSFRPQFSPRPPLQQSNPKKNIICNHCK

Click here to download the sequence:
Link to NCBI Protein BLAST