Transcript Information: S_Transcript_27823.p1


Annotated TAIR IDAT2G40030.1
Annotated Gene Namenuclear RNA polymerase D1B
Annotated Gene Symbol(s)NRPD1B, DRD3, ATNRPD1B, DMS5, NRPE1
Annotation TypeOrtholog
Chromosome Positionchr2:16715089-16723406 | Forward length=1976
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.8265392668337
Replicate 25.8491400527165
Replicate 35.6791548771289
Condition 2: 8 Hour
Replicate 19.2123537516078
Replicate 28.7627769860894
Replicate 39.6646160425608
Condition 3: 24 Hour
Replicate 14.6083349932928
Replicate 24.5812868488712
Replicate 35.7337267192991


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_27823.p1 GENE.S_Transcript_27823~~S_Transcript_27823.p1 ORF type:internal len:1588 (+),score=369.68,RNA_pol_Rpb1_2|PF00623.16|1.1e-33,RNA_pol_Rpb1_1|PF04997.8|1.2e-12,RNA_pol_Rpb1_1|PF04997.8|4.4e+03,RNA_pol_Rpb1_5|PF04998.13|1.1e-06,RNA_pol_Rpb1_5|PF04998.13|0.083,RNA_pol_Rpb1_3|PF04983.14|2e-09 S_Transcript_27823:1-4761(+)
CCTTTCCTTGGGTTGCCCTTGGAAACTGGCAAATGTGAATCCTGTGGTACGGCTGAACTTGGAAAATGTGAAGGACATTTTGGATATATTGAATTACCCATTCCAGTCTATCACCCTTCTCACATCAGTGAATTGAGACGGATGCTTAGCATACTGTGTCTGAAGTGTCTGAAGTTGAAGACGAGCAAGCCGTCAAAGAACAATGGTGTGATGGAGAGACTGTTATCAGCATGTTGTGAAGAAACATGTCATGTCTCAATAAAAGAAAGCAAGAATAATGATGGAGCATCTTTTCTTGAGCTTAGATTACCTGCCAGATACAGAACACATGATGGTGTTTGGAACTTTCTTGAGAGATATGGTTACAGATACGGGGATGGTTCTTCTAGGATATTGCTTCCTTCAGAGGTATCGGTGATTTTGAAAAAGTTGCCTGATGAGACAAGAAGAAAGCTAACTAGGAAAGGGTACTTTCCTCAAGATGGATATATCTTGCGATATTTACCTGTTCCCCCGAATTGTTTATCTGTGCCAGATATATCAGATGGTGTCAGTGTAATGTCTTCGGATCTTTCTACTGCAATGTTGAAGAAGGTTCTGAGGCAAATTGAGGTTATCAGAAGCTCTCGGTCTGGAGACCCAAACTTTGAATCACATGAAGTTGAAGCTAATGAGCTTCAGGTGGTCGTTTCTGACTATCTCCAAGTCAGAGGCACAAGCAAGGCTGCACGAGATGCAGACAATCGGTATGGAGTTACAAAAGAGGGCAATAATTCTTCAACCAAAGCGTGGCTTGAGAAGATGAGAACACTATTCATAAGTAAAGGTTCTGGTTTCTCATCACGTAGTGTCATCACCGGTGACGCTTATAAACCTGTGAATGAAATTGGCCTGCCTTCTGAGATTGCTAAAAAGATGACATTTGAGGAGAGAGTGAATGTGCACAACATTCAATATTTACAGAGCCTTGTAGATAGGAATTTGTGCTTGACGTTCAGGGATGGATCGTCCACATATTCACTTAGGGAGGGTTCAAAGGGACATACATTTCTTAGGCTTGGACAAATTGTTCATAGGAGGATCATGGATGGGGACATCGTTTTTATTAACCGACCTCCTACCACTCACAAACATTCTTTGCAAGCCTTGCATGTGTACATTCATGATGATCACACGGTCAAAATCAACCCTCTCATGTGTGGTCCTTTGGCTGCGGATTTTGATGGGGACTGTGTTCACTTGTTCTACCCCCAGTCACTTTCTGCAAGAGCTGAAGTTTTGGAGCTGTTCTCAGTTGACAAACAGTTGTTAAGCTCTCACAGTGGGAACCTTAACTTGCAGCTTACAACTGATTCTCTGTTGTCTCTGAAAACCATGTTTCAATTATATTTTCTAAACAAGGCTTCTGCTCAACAATTAGCTATGTATGCCTCTACTCCTTTGCCATCTCCTGCATTACTCAAAGCGTGTTCTTTTGGTCCACGTTGGACTGCTCTTCAAGTGCTGCAGACTGCTTTGCCACCTCAGTTTGAGTGCCGTGGGGATAGACTTTTAATTCATGGAAGCGAGGTGGTTAAACTAGATTTCAATCGGGATGTCATGGCATCAGTGATCAATGAGATCCTCACTTCTTTGTTTTTCAACAAAAGCCCCAAAGAGGCTCTGAATTTCTTTGACGCTCTTCAGCCACTTCTGATGGAAAACTTATTTGCTGAGGGTTTTAGTGTGGGATTGCATGACTTTTATATTCCCATATCAGAGTTACAAACTCTTCAGAGCCAGATTCAAGACATTTCACCTCTGTTACTTCAGTTGCGTTCGTCTTTTAATGAACTGGTCCAGCTGCAGTTTGAAAGTTATATACACCATCTTAAAGTGTCAGTAGCAAATTTCATTCTGAAGTCTTCAGCACTTGGAAACCTGATTGATTCTAGGAGTGAGTCAGCTATTGACAAGGTAGTGCAGCAGATAGGATTTTTGGGTTTGCAGTTGTCAGATAAGCGAAAATTCTATTCAAGAAGTTTGGTTGAGGAAGTGGCATGTCTTTTTCATGAGAAGTATCCATACACGGATCTGTACCCATCTGGGGCATTTGGATTAGTGAAGAGTTGCTTTTTCCGAGGATTGGACCCATATGAGGAGATTGTGCACTCGATTGCTACTAGGGAAGTCATTGTCCGCTCTTCAAAAGGATTGGCTGAGCCGGGAACACTTTTCAAGAACTTGATGGCAATTCTTAGAGATGTCGTCATATGCTATGATGGCTCAGTAAGAAATCTCAGTAGCAATTCAATTATTCAGTTTGAGTATGGATTGGGAGGGGTACCATCCCAGAGTTTATTTCCTGCAGGGGAGCCTGTTGGTGTTTTGGCTGCTACAGCCATGTCTAATCCGGCTTATAAAGCTGTTCTTGACTCTTCTCCTAGTAGCAATTCATCATGGGACATGATGAAGGAGATACTTTTTTGTCGTGTTAATTTCAAGAATGATTTGAATGACCGGCGTGTGATTCTTTATTTAAATGATTGTGATTGTGGAAGAAGGTATTGTCAAGAAAATGCTTCGTATGTAGTGAAGAATCATCTGAAGAAGGTTAGCTTGAGAGATGCTGCTGCAGAGTTCTTGATTGAGTATAAACATTCAAAAGCTGAACCTGGAAGTTCTGAGCTAGACACGGGACTTGTTGGTCATATTCATCTCAACAAGACGCGAGTGAATGAAGCAAACATTAGTATGCTTGAAATCCTTCAGAAATGTCAAGATGAAGTCAATATGCTGCGCAGGAAGAAGAAGTATGGTTTTTATTTTAAGAGGATTCTTCTGTCCGTCAGTGAGTGTTGCTACTTCCAGCATTCCAGCAGCAAGTGGTCTAATATGCCATGTCTGAAGTTCTCTTTGCAAGATTTGACTGATATTCATTTGGAGAGAACTTCACATATCATGGCCGATCTTATCTGCCCAATTCTTTTGGATACGATTATTAAAGGTGATCCTCGGATTTCCACTGTCAACATCATCTGGGTTAATCCAGATACAACAATGTGGGTTCAAAGTCCTTGCAGCGATAGAAAAGGTGAGCTTGCAGTGGAAGTAACTTTGGAGAAAACAGCAGTTCGTCAAAATGGTGATGCATGGAGAATTGTTCTGGATTGTTGTCTTCCTGTATTTCATTTGATTGACACTAGGCGTTCTATCCCATATGCCATAAAACAAATTCAGGACCTGTTTGGGATATCGTGTGCCTTTGATCAAGCGGTTCAGCGCCTGTCGACATCTGTGACAATGGTCACAAAAGGTGTGCTGAAGGAGCATTTGATTCTTTTGGCAAGTAGCATGACATGCGCAGGGAATTTGGTTGGGTTCAACATGAGTGGAATCAAAGCAATATGCCGGGCATTGAGTGTCCAAGTGCCTTTCACCGAAGCAACACTCTATACACCTCGGAAATGCTTTGAAAGGGCTTCTGAGAAGTGTCATGTGGACTCTCTAGCCAGCATTGTGGCATCATGTTCGTGGGGAAAACGTGTTTCTGTTGGTACAGGAGCAAAGTTCGATGTCCTGTGGGACACGAAAGAGACTGGAATTGGTGATCAACAAGTTGATGTTTACAACTTCCTCCATCTGGTCCGTGGTTCAAATGAGGAAGAGGTTGATGCTGGTTGCTTAGGTGAAGATACTGAGAGGTTTGAATGGGAAGATACATCTATGGAACCAGCACTCTCTCCTGATCAGGAAAATAAGGCTGTATTTGAAGACACAGTTGAAATTGGTTTAGATTCTCATGCATCGGGAGAGGGTGATTCGGGTTGGGATGCGAAAGGATGGGGTGGTAAGAATAATAGTGAGAACTTTGGTAGTGGTTCAGGTACAACTGAAAGCAATGGTTGGTCAAGCTGGGGGACGAAGAAAGATCCTTCTCAGCCACAAGAGTCTTCAGGTGCTGGTGGTTGGGAGACATCTAAGGTGGGTTCCCAGCAGGAAGAGAACGGTATACAATCGACTTGGGGGCAAGCGATCAACTCAAAGTGGAAGAATAGCAGTGAAACTACTGATGGATGGAACTCAGATAAGGCAAATGAAGAGGCTGTTTCAAATAGCTGGGATTCTAGGAAGGCAGATGGTAAAACTCACTCCTCATGGGGACAGCCAAGTGAGACAGCCTTGAAGGACTCTGTCCAGAATGCTGGTGGGTGGACTACGGAAAAGACTGCTGATGAGACTGGTTCAAAGAGCTGGCAGCACGGAAGAGAAGGCGGTAAAAGTCAGTCCTCATGGGGACAATCGAGTGAGGCGCCTTGGAAAAAATCCAATCAGAATGCTGGTGGCTGGGGTTCAGAAAAGTGTGGTACAGATGTTGCTTCGAAGAGCTGGGAGCCCAGAAAAGAAGGGGGTAAAACTCAGTCGTCATGGGGCCTATCAAGCGAGACAGCCTCAAAGGACTCCACCCCAAATGTTGGTGGCTGGAGCACAAAAGTGCCTGGCGAAGAGACTGGTTCAAAGAGCTGGGAGCTTGGAAGGGATGGGGGTAAAACTCAGTCCTCGTGGGGACAGCCTAGTGAGAAGGCTTGGAAGAACTCCAGTCAAAATGCTGGTGGCTGGGGCACTGAAAACCATGGTGAAGCAGTTGCTTCTAAGAGCTGGGAGCCCAGAAAGGAAGGAAGTGAAACTCAGTCCTCTTGGGGACAAAAAAGTGAGACGGTGTGGAAAACCTCAAATCAGAATGCTGGTGGCTGGAGTGCAGAAAAGCGCAGTGAAGAGGCT

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_27823.p1 GENE.S_Transcript_27823~~S_Transcript_27823.p1 ORF type:internal len:1588 (+),score=369.68,RNA_pol_Rpb1_2|PF00623.16|1.1e-33,RNA_pol_Rpb1_1|PF04997.8|1.2e-12,RNA_pol_Rpb1_1|PF04997.8|4.4e+03,RNA_pol_Rpb1_5|PF04998.13|1.1e-06,RNA_pol_Rpb1_5|PF04998.13|0.083,RNA_pol_Rpb1_3|PF04983.14|2e-09 S_Transcript_27823:1-4761(+)
PFLGLPLETGKCESCGTAELGKCEGHFGYIELPIPVYHPSHISELRRMLSILCLKCLKLKTSKPSKNNGVMERLLSACCEETCHVSIKESKNNDGASFLELRLPARYRTHDGVWNFLERYGYRYGDGSSRILLPSEVSVILKKLPDETRRKLTRKGYFPQDGYILRYLPVPPNCLSVPDISDGVSVMSSDLSTAMLKKVLRQIEVIRSSRSGDPNFESHEVEANELQVVVSDYLQVRGTSKAARDADNRYGVTKEGNNSSTKAWLEKMRTLFISKGSGFSSRSVITGDAYKPVNEIGLPSEIAKKMTFEERVNVHNIQYLQSLVDRNLCLTFRDGSSTYSLREGSKGHTFLRLGQIVHRRIMDGDIVFINRPPTTHKHSLQALHVYIHDDHTVKINPLMCGPLAADFDGDCVHLFYPQSLSARAEVLELFSVDKQLLSSHSGNLNLQLTTDSLLSLKTMFQLYFLNKASAQQLAMYASTPLPSPALLKACSFGPRWTALQVLQTALPPQFECRGDRLLIHGSEVVKLDFNRDVMASVINEILTSLFFNKSPKEALNFFDALQPLLMENLFAEGFSVGLHDFYIPISELQTLQSQIQDISPLLLQLRSSFNELVQLQFESYIHHLKVSVANFILKSSALGNLIDSRSESAIDKVVQQIGFLGLQLSDKRKFYSRSLVEEVACLFHEKYPYTDLYPSGAFGLVKSCFFRGLDPYEEIVHSIATREVIVRSSKGLAEPGTLFKNLMAILRDVVICYDGSVRNLSSNSIIQFEYGLGGVPSQSLFPAGEPVGVLAATAMSNPAYKAVLDSSPSSNSSWDMMKEILFCRVNFKNDLNDRRVILYLNDCDCGRRYCQENASYVVKNHLKKVSLRDAAAEFLIEYKHSKAEPGSSELDTGLVGHIHLNKTRVNEANISMLEILQKCQDEVNMLRRKKKYGFYFKRILLSVSECCYFQHSSSKWSNMPCLKFSLQDLTDIHLERTSHIMADLICPILLDTIIKGDPRISTVNIIWVNPDTTMWVQSPCSDRKGELAVEVTLEKTAVRQNGDAWRIVLDCCLPVFHLIDTRRSIPYAIKQIQDLFGISCAFDQAVQRLSTSVTMVTKGVLKEHLILLASSMTCAGNLVGFNMSGIKAICRALSVQVPFTEATLYTPRKCFERASEKCHVDSLASIVASCSWGKRVSVGTGAKFDVLWDTKETGIGDQQVDVYNFLHLVRGSNEEEVDAGCLGEDTERFEWEDTSMEPALSPDQENKAVFEDTVEIGLDSHASGEGDSGWDAKGWGGKNNSENFGSGSGTTESNGWSSWGTKKDPSQPQESSGAGGWETSKVGSQQEENGIQSTWGQAINSKWKNSSETTDGWNSDKANEEAVSNSWDSRKADGKTHSSWGQPSETALKDSVQNAGGWTTEKTADETGSKSWQHGREGGKSQSSWGQSSEAPWKKSNQNAGGWGSEKCGTDVASKSWEPRKEGGKTQSSWGLSSETASKDSTPNVGGWSTKVPGEETGSKSWELGRDGGKTQSSWGQPSEKAWKNSSQNAGGWGTENHGEAVASKSWEPRKEGSETQSSWGQKSETVWKTSNQNAGGWSAEKRSEEA

Click here to download the sequence:
Link to NCBI Protein BLAST