Transcript Information: S_Transcript_27887.p1


Annotated TAIR IDAT5G01960.1
Annotated Gene NameRING/U-box superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:370811-372775 | Forward length=426
E-Value4.6E-214
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 141.731450873038
Replicate 245.862437016366
Replicate 350.266265793814
Condition 2: 8 Hour
Replicate 154.220939210583
Replicate 254.35883222674
Replicate 350.568446977775
Condition 3: 24 Hour
Replicate 154.054467020343
Replicate 248.558421824217
Replicate 348.297531839584


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_27887.p1 GENE.S_Transcript_27887~~S_Transcript_27887.p1 ORF type:complete len:470 (+),score=74.50,zf-C3HC4_3|PF13920.2|3e-10,zf-RING_2|PF13639.2|3.6e-10,zf-C3HC4|PF00097.21|2.4e-08,zf-C3HC4_2|PF13923.2|9.4e-08,zf-RING_5|PF14634.2|1.8e-07,zf-rbx1|PF12678.3|1.1e-05,zf-RING_UBOX|PF13445.2|1.4e-05 S_Transcript_27887:594-2003(+)
ATGGAAGGGGGAGGAGGTAGTACGGAGAATCATCACAGAGAAAGAGGAACGTCTGGGGGAAATTCGTCGAGTTCGTCATCGTCACGGCGGTATAGAGTTCAATTATCGGCTTCGAATTTCATACGCTCTCCGATTTCGGCTCTTCTAGAATATTCTGGACTTTTACGCCCTAGGTCATCTTCTAGCAATCATCATGAGTCGGAATCACTAATCGCTGCCCCTCCGCCACTTCACGATTCGTCTTCTTCTTCTCCTTCTACTACTACTAGCAATGGTGGGGGTGGTGAGGTGTCGATTAGGATAATTGGTGCCAGTGAACCTGATAGAGTGTCGGACCAGCCGTGTCCGAGCGAGGTGGGCTTGCAGCAGCCTGTTCTTGCTTCGGTTTCCTCAACGGCGTCGTTGGATGGCCAGGATAGGAGTAATGGAGGTGGTGATGGGGTTTCGCATTTCTCGAGTTCGAGTGTTGATGCTGAGGCTGCTGATGGTGGCGGTGGGACGAATAATAACAGGGATACGACTTATCAACGCTATGATATTCAACAGGCTGCTCGCTGGATCGAGCAGGTCCTCCCCTTTTCTTTGCTCCTCCTCGTCGTCTTCATTCGCCAGCATTTGCAAGGCTTCTTTGTTACCATCTGGATTGCTGTTGTCATGTTCAAGTCTAATGACATTCTACGCAAACAAACTGCTCTCAAGGGAGAGAGGAAGATTCCTGTTTTAATCGGCATTTGCATCTTGTTCACACTTCATGTAGCTGGGGTTTATTGGTGGTACCGAAATGATGACATCCTCTATCCATTGATTATGCTCCCTCCAAAAGCTATACCTCCCTTCTGGCATGCTGTTTTTATCATTATGGTCAATGATACCTTGGTTCGCCAGTCAGCAATGGTTGTAAAGTGCATGTTACTCATTTATTACAAAAATAGCAGAGCAAGAAATTCCCGTAGGCAGGGCCAAATGCTGACTTTGGTGGAGTATCTGTTGCTTCTGTACCGAGCATTGTTGCCAACTCCAGTTTGGTATAGGTTTTTCCTAAACAAGGAATATGGAAGTCTCTTTTCGTCACTAATGACTGGCCTATACTTGACATTTAAGCTCACCTCTGTTGTTGAGAAGGTCCAATCATTTTTTGCTGCGCTGAAGGCATTGTCCCGCAAAGAGGTTCATTATGGAGCTTATGCAACTTCAGAGCAGGTTACTGCAGCAGGGGATATGTGTGCTATTTGTCAGGAGAAGATGCATGCTCCAATTCTACTTCGCTGCAAACACATATTTTGTGAAGATTGTGTCTCGGAATGGTTTGAGAGGGAGCGAACATGCCCCTTGTGCAGGGCTTTGGTGAAGCCTGCAGATCTGAAATCATTTGGTGATGGTTCAACGAGTTTATTTTTCCAGCTGTTCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_27887.p1 GENE.S_Transcript_27887~~S_Transcript_27887.p1 ORF type:complete len:470 (+),score=74.50,zf-C3HC4_3|PF13920.2|3e-10,zf-RING_2|PF13639.2|3.6e-10,zf-C3HC4|PF00097.21|2.4e-08,zf-C3HC4_2|PF13923.2|9.4e-08,zf-RING_5|PF14634.2|1.8e-07,zf-rbx1|PF12678.3|1.1e-05,zf-RING_UBOX|PF13445.2|1.4e-05 S_Transcript_27887:594-2003(+)
MEGGGGSTENHHRERGTSGGNSSSSSSSRRYRVQLSASNFIRSPISALLEYSGLLRPRSSSSNHHESESLIAAPPPLHDSSSSSPSTTTSNGGGGEVSIRIIGASEPDRVSDQPCPSEVGLQQPVLASVSSTASLDGQDRSNGGGDGVSHFSSSSVDAEAADGGGGTNNNRDTTYQRYDIQQAARWIEQVLPFSLLLLVVFIRQHLQGFFVTIWIAVVMFKSNDILRKQTALKGERKIPVLIGICILFTLHVAGVYWWYRNDDILYPLIMLPPKAIPPFWHAVFIIMVNDTLVRQSAMVVKCMLLIYYKNSRARNSRRQGQMLTLVEYLLLLYRALLPTPVWYRFFLNKEYGSLFSSLMTGLYLTFKLTSVVEKVQSFFAALKALSRKEVHYGAYATSEQVTAAGDMCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPADLKSFGDGSTSLFFQLF*

Click here to download the sequence:
Link to NCBI Protein BLAST