Transcript Information: S_Transcript_27907.p1


Annotated TAIR IDAT5G51140.2
Annotated Gene NamePseudouridine synthase family protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:20784103-20786793 | Reverse length=410
E-Value2.9E-177
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.1328425447574
Replicate 24.724032587609
Replicate 35.1205714302703
Condition 2: 8 Hour
Replicate 14.917384120186
Replicate 24.8428472349526
Replicate 34.3634793920785
Condition 3: 24 Hour
Replicate 14.7801745050006
Replicate 24.426109084322
Replicate 34.0948730916541


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_27907.p1 GENE.S_Transcript_27907~~S_Transcript_27907.p1 ORF type:complete len:425 (+),score=65.84,PseudoU_synth_2|PF00849.18|9.4e+03,PseudoU_synth_2|PF00849.18|6.9e-27 S_Transcript_27907:64-1275(+)
ATGAAGCGAAAGAGAAACCAAGAGGAACAACAACTTGACCACCTTCAACAACCCACCAGTGCCACCACCACCACCACCACTACCACCGGCACCATGGACATTGTTTGGCAAACCCCAGCTAATCCTCCCCTTCGCGAAGACTATGTCTTCCACAAAGGAAGGCGCTATGTACGGCCTTACTACTTCGAGTTCATCTGCCATGTGAAAAATCGTTGGCCTGGTAAAACTATAGTTGATTTATTCGCTGACGAATTCAAAGGCCGGCCCTATGATTACTATGTTACAGCTGTCAAATGTGGGAGAATACAGGTTGATGGACAAAATGTTTCTGTTCACTATAGAGTGAAACCGACACAAAAAATAAGCCACTTTGTCCACAGGCATGAACCACCGGTAATGGCCTGGGATGTCTCGATTCTGCAGAAAGAACCTGAAGTGCTGACTGTCTGCAAGCCGGCTTCTGTTCCTGTGCATCCTTGCGGTCAATACCGGAAGAACACGATCCTGGGAATTCTCGAAGCAGAGCATGGTTTAACACCACTATTCCCTATACATAGATTGGATCGTCTGGTCTCTGGACTCCTGATATTGGCGAGGAATGCTTGCAAGGCTGATAAGTTCAGGCAACAGATTGAAGCAGGACTGGTGAAAAAACAGTACATTGCAAAGGTTGTGGGGGTTTTTCCAGAGGGTGAGCAAGTTGTGGACTTGAACATAAATTATGATGCTCGAGAAGGAAGAAGTACTGTGGAGGGTGGACATGGAACTGATGGTACAAAACTAAAAGGCAAGGCTGCTTGTACAAAATTTAGAAGGATAAGCACTAATGGAGTTCTGAGCATTGTCCAATGTGAACCAGTCAGTGGAAGAACACATCAGATACGTGTTCATCTTCAATATACTGGCCATCCAATTGCCAATGATATGCTCTACCTTGTTGAATCTATTGCTCAACGTTCCACTGAAGGAATGAGTGCTGATAGAGTTGCTGCTAAATTGAGGGATTCTTCGCAATGCAGTACTGCTGAAGAAGACAATGAAGAGGGATCGTTTACAGATTTTAGCGTCGATCCTATGTGTACAAATTGTCCACATTTGGGTCCTAAAGGGTATGGTGGTCATGAGGAGGGTTTGTGGTTACATTGCGTAAAGTACACAGGGCCTGATTGGACTTATGAATGCCCATATCCTGACTGGGCCAACCTCGACTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_27907.p1 GENE.S_Transcript_27907~~S_Transcript_27907.p1 ORF type:complete len:425 (+),score=65.84,PseudoU_synth_2|PF00849.18|9.4e+03,PseudoU_synth_2|PF00849.18|6.9e-27 S_Transcript_27907:64-1275(+)
MKRKRNQEEQQLDHLQQPTSATTTTTTTTGTMDIVWQTPANPPLREDYVFHKGRRYVRPYYFEFICHVKNRWPGKTIVDLFADEFKGRPYDYYVTAVKCGRIQVDGQNVSVHYRVKPTQKISHFVHRHEPPVMAWDVSILQKEPEVLTVCKPASVPVHPCGQYRKNTILGILEAEHGLTPLFPIHRLDRLVSGLLILARNACKADKFRQQIEAGLVKKQYIAKVVGVFPEGEQVVDLNINYDAREGRSTVEGGHGTDGTKLKGKAACTKFRRISTNGVLSIVQCEPVSGRTHQIRVHLQYTGHPIANDMLYLVESIAQRSTEGMSADRVAAKLRDSSQCSTAEEDNEEGSFTDFSVDPMCTNCPHLGPKGYGGHEEGLWLHCVKYTGPDWTYECPYPDWANLD*

Click here to download the sequence:
Link to NCBI Protein BLAST