Transcript Information: S_Transcript_280096.p1


Annotated TAIR IDATMG00860.1
Annotated Gene NameDNA/RNA polymerases superfamily protein
Annotated Gene Symbol(s)ORF158
Annotation TypeHomolog
Chromosome PositionchrM:235916-236392 | Forward length=158
E-Value8E-27
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.25193030429173
Replicate 20.24682983153846
Replicate 30.19045854819553
Condition 2: 8 Hour
Replicate 10.40375093543625
Replicate 20.40431051758542
Replicate 30.45860257325691
Condition 3: 24 Hour
Replicate 10.22559260059133
Replicate 20.15603312617107
Replicate 30.41240864345715


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_280096.p1 GENE.S_Transcript_280096~~S_Transcript_280096.p1 ORF type:complete len:1162 (+),score=215.00,RVT_1|PF00078.23|3.4e-31,RVT_1|PF00078.23|5.5e+03,Retrotrans_gag|PF03732.13|3.9e-16,Asp_protease_2|PF13650.2|8.3e-11,gag-asp_proteas|PF13975.2|4.9e-10,Asp_protease|PF09668.6|2.3e+03,Asp_protease|PF09668.6|3.2e-07 S_Transcript_280096:67-3552(+)
ATGGAAGGCACAAGTGAGATCACCCAAGTCGGCAAGGGAGCCGAGAAGAAATCAAAAAGCCAGAGATCTCGGGATGCCATGGAGGATTTTGAGGCACGGCTAGCCAAGGTGGAACTTGCAATAGCCGATGGGGAGGAGAAGTTCGAGGAGGCGGAGAAGAGCGTGGAGACTCTTCGTGAAGAGGTGCAATCCGCAGTGAACCAAGTCCTTTCCCAGTGTCTTGAAAATATGAAGGCCATGGAAGAGTCTCATAAGGCGGAGATTTCTTCAATCCGGGAAGAACTTGCTACAGTCTCACTTAAGTTGGAAAGTGCCGAGGAGGAACTCGCCTTGTGCAAGAGGGCCATCGCACAAGGGAGCCCATCTACGTCCGAGGTAAGGACTACACTCTCGAAGGTAGATGTTCCACGACCCAAAGCTTATAAAGGGTCTAGGAATGCGAAGGAACTTGATAATTTTATATGGAGTATGGAGCAATACTTCCGAGTTCTTGAAATAACCGACGAAGAGCGGAAGGTTGATATGGCTAGTCTCTACCTCGAGGACACCGCGATGGTATGGTGGAGGAGGAGACAAGGGGACAAAGAGAAAGGCACTTGCACCATCAATACTTGGGCCGAGTTCAAGACCGAACTCAAGAAGCAGTTCTACCCGAGTAATGTTGAAGAAGAAGCCAGAGGAAAGCTGAGGCGTCTTCAACACAAGGGAAGCATTCGAGAATATGTGAAGGAATTCACCGAGGTACTTCTTGAAATCCCTGACTATCCTGATAAAGAAGCTTTCTTCGCCTTCATGGATGGTCTACAACAGTGGGCCAGACTTGAGCTACAAAGACGCGGTGCTCAAGATTTGACCACTGCTATTACCATTGCCGAGTCCCTTATCGAGTTTAAGAAGCCCGAGAAGCCAAAGGCAAAGGATAAGGGTGGTAAGGGTAAGAGTGGGGGAGAGCACCACCGAGGCAAAGAAACCACAGACAAGCCGAAGGGTCCAAAGGAGTACAAGACGGGAGATAGGCCACCGCTCAAATGCTTCTTTTGTGAGGGAGCACATAAGGCAAGGGATTGCCCAAAGAAAGCCAAGCTCTCTGCATTGATCGAAGAAAGGGAGCGCGAAGAGGCGAAAGTGGGATCCCTACAACTCCTCAACGCAATCAAGGCAAAGGTGGAGGAGCCCAAGTCCGGAATGAAGGGTCGGTTATTCGTGGAAGCTAAGATTGGCGGACATACCGTGAAAGCATTGGTAGACACGGGAGCTTCCAACAACTTCCTTAGAGAGGAAGAGGCCAAGAAACTGGGCATCCGATATCAAGGAGAACGTGGATGGCTCAAGGCTGTCAACTCAAAGCCGAGTGCTACCTTCGGAGTTGCCAAAGGTGTCCAGGTACGCTTAGGTGATTGGTGTGGTTCTATTGATTTCTCAGTTGTCACCATGGATGACTACCCTATTGTCCTGGGTATGGATTTCATGGATAAAGTTAAGGCCATACCTATCCCCTTTGCAAGTACTATGTGTATCTTAGAGGAAGGCAACACCCGGCTAGTTCCCTTGGAACGAGAGGTCCGACTACGGGAGAAGCAGATTTCGGCATTACAACTCTCTAAGGGGCTAAAGAAGAAGGAGTCGACCTATCTAGTTGCCTTGAAGGAAGAAGGAGTTGTTCAGCCCACTGAAGATCTCCCGGGAAGCATAGGGCACGTTTTTGAGGAATTTCAAGATGTTATGCCGCCCGAGTTGCCGAAGAGATTGCCACCAAAGAGAGAGGTGGATCACAAGATTGAGTTGGTACCTGGCGCCACTCCGCCAGCGGCTGTACCATACCGCATGGCGCCTCCGGAGCTTGAAGAACTTAGGAGGCAATTGAAGGAATTGATGGACATGGGGTACATCCGTCCATCAAAAGCGCCATATGGAGCCCCGGTTTTGTTTCAGAAGAAGCATGATGGATCGCTTCGATTGTGCATAGATTACCGGGCACTCAACAAAATCACGGTGAAGAACAAGTATCCAATCCCACTAATCGCTGATCTGTTCGATCAACTTGGCCAAGCTCGATGGTTCACCAAGTTGGATTTGAGGTCGGGATACTATCAAGTAAGGATAGCCGTAGGGGACGAACCTAAGACAGCTTGCGTTACGAGGTATGGTTCGTATGAATTTCTTGTTATGCCTTTTGGGCTCACAAATGCACCAGCAACGTTTTGCACCCTCATGAACCGAGTCCTACAACCATTCTTGGATAAGTTCGTGGTGGTGTATTTGGATGATATTGTCGTATACAGCAAAACCTCGGAAGATCATGTAAAGCACTTGAGGCAAGTCTTCCAAGTCCTCCGAGAAAATGAGTTATATGTGAAGAAGGAGAAATGTGCCTTCGCCCAGAGCGAATTATCCTTCTTGGGTCACATTGTCGGAGGAGGCAAACTAAGGATGGATGAGTCCAAAGTTCGAGCAATTCAAGAATGGGAGCCACCGAAGAAGGTCCCGGAACTTCGTTCTTTTCTTGGATTGGCCAACTATTATCGGAAATTCATCAAGGGCTATTCTGCCATAGCCGCTCCCCTCACCGATCTCTTGAAGAAGAATCGAACATGGGATTGGAACGAGAAGTGCCAGGCAGCTTTTGAGGAGCTGAAAGCCGCCATGATCAAGGAACCAGTATTGGCTCTACCCGACCACACCAAGCCATTTGAGGTACAAACGGATGCTTCCGACTTTGCCTTAGGAGGTGTCCTAATGCAAGATGGTCACCCTGTGGCTTACGAGAGTCGTAAGCTTAATGATGCCGAGCGACGATACACAGTCCAAGAAAAAGAGATGACGGCTGTGGTACATTGTTTGAGAACATGGAGGCACTATCTGTTGGGCACCAAGTTTATTGTGAAGACCGACAATGTCGCCACAAGCTACTTCCTTAAGCAGAAGAAGTTGACACCCAAGCAGGTAAGGTGGCAAGCCTTCTTAGCTGAGTTTGATTTTGTGATGGAGTACAAGCCCGGCAGGGGAAATGTCGTGGCCGATGCCTTAAGCAGAAAGGCGGAACTTGCCTCCATCACTAGTGCAAGCTTTCCTTTGGTAGATCGTATCAAGGAAGGATTGGAGCAAGACCCACAAGCCAAGAGTTTGAGAGAATTGGCAAGTCAGGGAAGGACACGCCGATTTTGGCTTGAAGATGGGGTGCTCGTTACCAAAGGAAACCGAGTATATGTGCCAAAATGGCAAGGCTTAAGGAAGGAAATCATCAAAGAGTGCCATGACTCAAAATGGGCTGGTCACCCTGGAGTTCGGCGCACTTTAGCCCTCATTGAGCGGGCATACTTTTGGCCCCATATGCGAGAAGATGTAGAGCTCTATGTCAAGACTTGTATGCCAACAAGACAAGGTGGAGCAACGCTCCACTCCCGGTCTATTGGAGCCATTGCCGATACCCGAGAGACCATGGGAAAGCATTTCCATGGACTTCATTACTTGTTTGCCGAAGTCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_280096.p1 GENE.S_Transcript_280096~~S_Transcript_280096.p1 ORF type:complete len:1162 (+),score=215.00,RVT_1|PF00078.23|3.4e-31,RVT_1|PF00078.23|5.5e+03,Retrotrans_gag|PF03732.13|3.9e-16,Asp_protease_2|PF13650.2|8.3e-11,gag-asp_proteas|PF13975.2|4.9e-10,Asp_protease|PF09668.6|2.3e+03,Asp_protease|PF09668.6|3.2e-07 S_Transcript_280096:67-3552(+)
MEGTSEITQVGKGAEKKSKSQRSRDAMEDFEARLAKVELAIADGEEKFEEAEKSVETLREEVQSAVNQVLSQCLENMKAMEESHKAEISSIREELATVSLKLESAEEELALCKRAIAQGSPSTSEVRTTLSKVDVPRPKAYKGSRNAKELDNFIWSMEQYFRVLEITDEERKVDMASLYLEDTAMVWWRRRQGDKEKGTCTINTWAEFKTELKKQFYPSNVEEEARGKLRRLQHKGSIREYVKEFTEVLLEIPDYPDKEAFFAFMDGLQQWARLELQRRGAQDLTTAITIAESLIEFKKPEKPKAKDKGGKGKSGGEHHRGKETTDKPKGPKEYKTGDRPPLKCFFCEGAHKARDCPKKAKLSALIEEREREEAKVGSLQLLNAIKAKVEEPKSGMKGRLFVEAKIGGHTVKALVDTGASNNFLREEEAKKLGIRYQGERGWLKAVNSKPSATFGVAKGVQVRLGDWCGSIDFSVVTMDDYPIVLGMDFMDKVKAIPIPFASTMCILEEGNTRLVPLEREVRLREKQISALQLSKGLKKKESTYLVALKEEGVVQPTEDLPGSIGHVFEEFQDVMPPELPKRLPPKREVDHKIELVPGATPPAAVPYRMAPPELEELRRQLKELMDMGYIRPSKAPYGAPVLFQKKHDGSLRLCIDYRALNKITVKNKYPIPLIADLFDQLGQARWFTKLDLRSGYYQVRIAVGDEPKTACVTRYGSYEFLVMPFGLTNAPATFCTLMNRVLQPFLDKFVVVYLDDIVVYSKTSEDHVKHLRQVFQVLRENELYVKKEKCAFAQSELSFLGHIVGGGKLRMDESKVRAIQEWEPPKKVPELRSFLGLANYYRKFIKGYSAIAAPLTDLLKKNRTWDWNEKCQAAFEELKAAMIKEPVLALPDHTKPFEVQTDASDFALGGVLMQDGHPVAYESRKLNDAERRYTVQEKEMTAVVHCLRTWRHYLLGTKFIVKTDNVATSYFLKQKKLTPKQVRWQAFLAEFDFVMEYKPGRGNVVADALSRKAELASITSASFPLVDRIKEGLEQDPQAKSLRELASQGRTRRFWLEDGVLVTKGNRVYVPKWQGLRKEIIKECHDSKWAGHPGVRRTLALIERAYFWPHMREDVELYVKTCMPTRQGGATLHSRSIGAIADTRETMGKHFHGLHYLFAEV*

Click here to download the sequence:
Link to NCBI Protein BLAST