Transcript Information: S_Transcript_280383.p1


Annotated TAIR IDAT1G20230.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:7009570-7011852 | Forward length=760
E-Value3.5E-187
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.23175327635861
Replicate 20.096064395751153
Replicate 30.37474354886852
Condition 2: 8 Hour
Replicate 10.83568292969897
Replicate 21.2338610280256
Replicate 31.0518705639613
Condition 3: 24 Hour
Replicate 10.28534680902082
Replicate 20.36183153460061
Replicate 30.54910111186755


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_280383.p1 GENE.S_Transcript_280383~~S_Transcript_280383.p1 ORF type:complete len:689 (+),score=124.81,PPR|PF01535.16|1.3e+03,PPR|PF01535.16|0.0011,PPR|PF01535.16|0.018,PPR|PF01535.16|0.0005,PPR|PF01535.16|2.3e+03,PPR|PF01535.16|3.3,PPR|PF01535.16|8.8e-06,PPR|PF01535.16|1.3e-05,PPR|PF01535.16|0.038,PPR|PF01535.16|4.5e-06,PPR|PF01535.16|0.083,PPR|PF01535.16|0.0037,PPR|PF01535.16|13,PPR_2|PF13041.2|6.9e+02,PPR_2|PF13041.2|0.055,PPR_2|PF13041.2|0.24,PPR_2|PF13041.2|9.3e-07,PPR_2|PF13041.2|1.3e+02,PPR_2|PF13041.2|3.3e-06,PPR_2|PF13041.2|1.2e-08,PPR_2|PF13041.2|1.8e+02,PPR_2|PF13041.2|1.2e-10,PPR_2|PF13041.2|0.53,PPR_2|PF13041.2|2.7,PPR_2|PF13041.2|1.5e+02,DYW_deaminase|PF14432.2|3e-40,PPR_3|PF13812.2|30,PPR_3|PF13812.2|0.029,PPR_3|PF13812.2|9,PPR_3|PF13812.2|0.04,PPR_3|PF13812.2|3.9e+03,PPR_3|PF13812.2|0.0018,PPR_3|PF13812.2|0.043,PPR_3|PF13812.2|3.2,PPR_3|PF13812.2|11,PPR_3|PF13812.2|4.2e+02,PPR_3|PF13812.2|4.6,PPR_3|PF13812.2|2.5e+03,PPR_1|PF12854.3|1.2e+02,PPR_1|PF12854.3|5.3,PPR_1|PF12854.3|40,PPR_1|PF12854.3|36,PPR_1|PF12854.3|7.1e+02,PPR_1|PF12854.3|2.9e+02,PPR_1|PF12854.3|0.074,PPR_1|PF12854.3|0.0069,PPR_1|PF12854.3|5.3e+02,PPR_1|PF12854.3|87,PPR_1|PF12854.3|0.18,PPR_1|PF12854.3|0.014 S_Transcript_280383:264-2330(+)
ATGTTTTCCAAGCTACCAACTAACTTTTCGCCTTACCTAAACGAGAAGTTGCTTCGTACTTTTCTTAACTCTGGCGATTTAGCAAGTGCCCGCCAAGTGTTTGATAAAATTCCTGAACCAAGCTTACATTCTTGGACAAACTTGATTTCTGCTTACAGAAAGCAAGGCCTGCCAAATGAAGCAATCAAGCTCTATTCTTTATTTCGGAACCAGAACACTCAGGTGCCTGATAGAGTAGTGCTTTTATCAGCTGCAAAGGCATGTGCTTTATATGCTGATCTTACCAAAGCAAAACAGATACATGAGGACGCTATTACATTTGGACTTCATTGTGATCTTGTTTTGGGCAATGCTCTGATTGATATGTTTGCAAAATGCAAATACTATGAGGGTGCTCGAAGTGTCTTCGACGAGTTGCCTATGAAGGATGTTATTTCTTGGACCTCATTGATGTCATGTTATGTAAATTGTGGGCTTCATAGGCAGGCTTTGATAACATTTTCTGAGATGGGGCTCAAAGGGTCATTGAGGCCAACTGCTGTTACTTTGTCATCGATCATCCCTGCTTGCTCTCATTCAAAGTGCTTGAATTCAGGTAGACAGATACATGGATATGTTGTGAAGAATGGCTATGGGGGGAATACATTTGTTACTAGTGCCCTTGTTGATATGTACGCAAGCTGCTCATGTCTTAAGGAGGCTCAGTTGGTATTTGACAACATGACTGTACGAGACACTGTGTCGTGGAATGTTATATTATCAGCATATTTCTTACATGGAGAGTCTGAGAAGGCTCTCAGCTTATATGGTCAGATGAGAACACAGGGGTTACCTCTAAATTATGATTCATGGAATACTGTGATTGGTGGGTGTATGCAAAATGGATATAATACCCAAGCTCTTGAGTTACTTGTGGAAATGCAACAAAGGGGGTTCAAACCCAATCATATTTCTATCACTAGTGCTTTACCTGCATGCTCAAATTTGGAGAGCTTAAGGAAGGGAAAAGAGATTCATGGTTACATTCTTAGGAATATGATTTCTGATGACATGACTGTCACAACAGCATTGATGTACATGTATGCTAAATGTGGAGAGCTTGAAAGATCTCGTTGGATTTTTGATTCCATGCCCAGAAAGGACTATATTGCGTGGAATACAATGATTATTGCTTACTCAATGCATGGGAATGGGGGAGAAGCTTTGTTGCTCTTCCAGAATATGGTAAATTGTGGGGTTAAACCCAATTCTGTTACTTTTACTGGAGTTCTGTCCGGTTGTAGTCACTCGAGGCTTGTTGATGAGGGTCTTCGGGTTTTTCATTCAATAAGTAAGGATTACTTTATTGAACCTGATGCGGATCATTATTCAAGCTTGGTTGATATGCTTAGCCGTGCTGGTCACCTTGAAGAAGCATACTCATATATTCAAAGAATGCCCATGGAACCAACTGCTGGTGCCTGGGGTGCTTTACTTGGTGCTTGTAGGGTGTATAAGAATGTAGAATTGGCTCAAATTGCCGCAAAGCATCTGTTTGAAATCGAACCTGAAAATCCTGGAAATTATATATTGTTGTCAAACATCTTTGTTGCTGCCAAACTATGGGGTGAAGCTTCTGAGATTAGAAAGCAAATGGAGGACAAGGGAATTTCGAAACCACCTGGTTGCAGTTGGATTCAGATCAGTAACAGAGTATACACCTTTGTTGTTGGTGATAAGAGAAATGAACATAGTGAAACGATCTACAAGTTCTTGAACAGTATCAGTGATAAGGTCAGAATGGCTGGTTATTTGCCCAATACTGATTTTGTTCTGCAAGATTTGGATCAAGAGGAGAAAGAGGAAGTCTTATGCAACCACAGTGAGAAGCTTGCTGTTGCTTTTGGGTTACTTAATTTGAAGGGGGAAACATCTATTCGTGTGTTTAAAAACTTGAGAATTTGTGGGGACTGTCATAATTTCATTAAATTCACAGCCAAGATTGTTGGTGTACGGATCATTGTTAGAGATTCTTTGAGATTTCACCACTTCAAGGATGGGGTTTGCTCCTGTCAAGACTTTTGGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_280383.p1 GENE.S_Transcript_280383~~S_Transcript_280383.p1 ORF type:complete len:689 (+),score=124.81,PPR|PF01535.16|1.3e+03,PPR|PF01535.16|0.0011,PPR|PF01535.16|0.018,PPR|PF01535.16|0.0005,PPR|PF01535.16|2.3e+03,PPR|PF01535.16|3.3,PPR|PF01535.16|8.8e-06,PPR|PF01535.16|1.3e-05,PPR|PF01535.16|0.038,PPR|PF01535.16|4.5e-06,PPR|PF01535.16|0.083,PPR|PF01535.16|0.0037,PPR|PF01535.16|13,PPR_2|PF13041.2|6.9e+02,PPR_2|PF13041.2|0.055,PPR_2|PF13041.2|0.24,PPR_2|PF13041.2|9.3e-07,PPR_2|PF13041.2|1.3e+02,PPR_2|PF13041.2|3.3e-06,PPR_2|PF13041.2|1.2e-08,PPR_2|PF13041.2|1.8e+02,PPR_2|PF13041.2|1.2e-10,PPR_2|PF13041.2|0.53,PPR_2|PF13041.2|2.7,PPR_2|PF13041.2|1.5e+02,DYW_deaminase|PF14432.2|3e-40,PPR_3|PF13812.2|30,PPR_3|PF13812.2|0.029,PPR_3|PF13812.2|9,PPR_3|PF13812.2|0.04,PPR_3|PF13812.2|3.9e+03,PPR_3|PF13812.2|0.0018,PPR_3|PF13812.2|0.043,PPR_3|PF13812.2|3.2,PPR_3|PF13812.2|11,PPR_3|PF13812.2|4.2e+02,PPR_3|PF13812.2|4.6,PPR_3|PF13812.2|2.5e+03,PPR_1|PF12854.3|1.2e+02,PPR_1|PF12854.3|5.3,PPR_1|PF12854.3|40,PPR_1|PF12854.3|36,PPR_1|PF12854.3|7.1e+02,PPR_1|PF12854.3|2.9e+02,PPR_1|PF12854.3|0.074,PPR_1|PF12854.3|0.0069,PPR_1|PF12854.3|5.3e+02,PPR_1|PF12854.3|87,PPR_1|PF12854.3|0.18,PPR_1|PF12854.3|0.014 S_Transcript_280383:264-2330(+)
MFSKLPTNFSPYLNEKLLRTFLNSGDLASARQVFDKIPEPSLHSWTNLISAYRKQGLPNEAIKLYSLFRNQNTQVPDRVVLLSAAKACALYADLTKAKQIHEDAITFGLHCDLVLGNALIDMFAKCKYYEGARSVFDELPMKDVISWTSLMSCYVNCGLHRQALITFSEMGLKGSLRPTAVTLSSIIPACSHSKCLNSGRQIHGYVVKNGYGGNTFVTSALVDMYASCSCLKEAQLVFDNMTVRDTVSWNVILSAYFLHGESEKALSLYGQMRTQGLPLNYDSWNTVIGGCMQNGYNTQALELLVEMQQRGFKPNHISITSALPACSNLESLRKGKEIHGYILRNMISDDMTVTTALMYMYAKCGELERSRWIFDSMPRKDYIAWNTMIIAYSMHGNGGEALLLFQNMVNCGVKPNSVTFTGVLSGCSHSRLVDEGLRVFHSISKDYFIEPDADHYSSLVDMLSRAGHLEEAYSYIQRMPMEPTAGAWGALLGACRVYKNVELAQIAAKHLFEIEPENPGNYILLSNIFVAAKLWGEASEIRKQMEDKGISKPPGCSWIQISNRVYTFVVGDKRNEHSETIYKFLNSISDKVRMAGYLPNTDFVLQDLDQEEKEEVLCNHSEKLAVAFGLLNLKGETSIRVFKNLRICGDCHNFIKFTAKIVGVRIIVRDSLRFHHFKDGVCSCQDFW*

Click here to download the sequence:
Link to NCBI Protein BLAST