Transcript Information: S_Transcript_281665.p1


Annotated TAIR IDAT3G59090.2
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1084 (InterPro:IPR009457); BEST Arabidopsis thaliana protein match is: tobamovirus multiplication 1 (TAIR:AT4G21790.1); Has 198 Blast hits to 197 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 190; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr3:21839334-21842449 | Forward length=373
E-Value5E-19
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.2177501029317
Replicate 21.8385657964596
Replicate 31.0758262715434
Condition 2: 8 Hour
Replicate 14.6205012353788
Replicate 24.660801799943
Replicate 32.1315847604981
Condition 3: 24 Hour
Replicate 12.1844883490594
Replicate 22.0775160611652
Replicate 30.84073481350387


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_281665.p1 GENE.S_Transcript_281665~~S_Transcript_281665.p1 ORF type:5prime_partial len:120 (+),score=12.51 S_Transcript_281665:1-360(+)
GTTGTTTCTCTTGCATGTTTCACAACAAGTGCTTTGGTAGCTCTTCTCACAGATATTCCGGTTCTTTATCATTGGCATCAAGAGCATATAAGTGGTGTTAGTACTGCGCTCTTACTGTTCCTATACCATTTTATAGTTGGTATCTTCAATCCAGGTTCATCAACACCGTCTGCATTTGTACTGTGGAATATGAGAGAACTACCACCATCAAGGGCAACAAACAGACATGAAGATTCTAGAATAGTGTTCATAAATGATAGTTCAACAGGGGTATGTGATTCTCAGCGTTGGACAACGGTCACAAGCTTGCAAAATCAGGTTTTCTTACATGAAGCATTTTTAGTTGCCTTTTTCCCTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_281665.p1 GENE.S_Transcript_281665~~S_Transcript_281665.p1 ORF type:5prime_partial len:120 (+),score=12.51 S_Transcript_281665:1-360(+)
VVSLACFTTSALVALLTDIPVLYHWHQEHISGVSTALLLFLYHFIVGIFNPGSSTPSAFVLWNMRELPPSRATNRHEDSRIVFINDSSTGVCDSQRWTTVTSLQNQVFLHEAFLVAFFP*

Click here to download the sequence:
Link to NCBI Protein BLAST