Transcript Information: S_Transcript_281672.p1


Annotated TAIR IDAT3G59090.2
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1084 (InterPro:IPR009457); BEST Arabidopsis thaliana protein match is: tobamovirus multiplication 1 (TAIR:AT4G21790.1); Has 198 Blast hits to 197 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 190; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr3:21839334-21842449 | Forward length=373
E-Value3E-10
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.3030481838137
Replicate 21.060711036419
Replicate 33.0146780136655
Condition 2: 8 Hour
Replicate 14.5111402593935
Replicate 24.7325064430191
Replicate 34.3041615356212
Condition 3: 24 Hour
Replicate 12.5205634796839
Replicate 22.1792126515719
Replicate 32.425196577415


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_281672.p1 GENE.S_Transcript_281672~~S_Transcript_281672.p1 ORF type:5prime_partial len:104 (+),score=17.26 S_Transcript_281672:1-312(+)
ACTCTTATTGCCACTTGCAATTCATGGTCATGCTGGTCAAATTCCTGTGGCTTTGTATTCATAGCCTTCCCAAAGATCCTGTTTCTTGCAGCTTTTCTACTACTTTTGTCATACTGGGTCGATCTTTGCCATCAGGCTGATGATGAAGATGATGAGGAGGAGAGTAGTTCTCGTGAAACTTTATTGGAGAAGTCAAGAAAGCCAGCATCATCAGACATTAGCAGTTATCAGCGATGTCTTCCTGTTCCGTCCTGTCATGTTGGAAGCCGCCAAAGATATGTTATTGTAGTATGTTACTGCAATCATGTTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_281672.p1 GENE.S_Transcript_281672~~S_Transcript_281672.p1 ORF type:5prime_partial len:104 (+),score=17.26 S_Transcript_281672:1-312(+)
TLIATCNSWSCWSNSCGFVFIAFPKILFLAAFLLLLSYWVDLCHQADDEDDEEESSSRETLLEKSRKPASSDISSYQRCLPVPSCHVGSRQRYVIVVCYCNHV*

Click here to download the sequence:
Link to NCBI Protein BLAST