Transcript Information: S_Transcript_281779.p1


Annotated TAIR IDAT5G09880.1
Annotated Gene NameSplicing factor, CC1-like
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:3081646-3085179 | Reverse length=527
E-Value4.1E-60
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 16.0029326094392
Replicate 24.6447978015821
Replicate 35.54668754394
Condition 2: 8 Hour
Replicate 15.6119448202982
Replicate 27.569422472088
Replicate 38.3340156049551
Condition 3: 24 Hour
Replicate 14.4346755958349
Replicate 28.6906345142385
Replicate 37.2062984014617


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_281779.p1 GENE.S_Transcript_281779~~S_Transcript_281779.p1 ORF type:complete len:133 (-),score=30.93,RRM_1|PF00076.18|8.6e-22,RRM_6|PF14259.2|1.8e-12 S_Transcript_281779:323-721(-)
ATGTCTGTGCCAATGGCGATTGCTCTCTCCGGTCAGCTACTTCTAGGGCAGCCAGTGATGGTTAAACCATCTGAAGCTGAAAAGAACCTTGTCCAGTCAACAGCTTCCACTGGCTCAAGTGTGACAGGCCCATATGGACCAACTGATAGGAAGTTGTATGTTGGTAATTTGCATTTCAACATGACAGAGCAACAGCTACGTCAGATCTTTGAGCCTTTTGGTCCAGTGGAGCTGGTGCAGCTACCCCTTGACCTGGAGACAGGACACTGCAAAGGTTTTGGGTTTGTTCAATTTGCTCAAGTTGAACATGCAAAGGCAGCTAAGAGTTTGAACAGTAAATTGGAAATTGATGGTATATATATTAAGGTGAGCTTTAGTTGCAATCTAGCGACATGGTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_281779.p1 GENE.S_Transcript_281779~~S_Transcript_281779.p1 ORF type:complete len:133 (-),score=30.93,RRM_1|PF00076.18|8.6e-22,RRM_6|PF14259.2|1.8e-12 S_Transcript_281779:323-721(-)
MSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSTASTGSSVTGPYGPTDRKLYVGNLHFNMTEQQLRQIFEPFGPVELVQLPLDLETGHCKGFGFVQFAQVEHAKAAKSLNSKLEIDGIYIKVSFSCNLATW*

Click here to download the sequence:
Link to NCBI Protein BLAST