Transcript Information: S_Transcript_28250.p2


Annotated TAIR IDAT2G27900.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2451, C-terminal (InterPro:IPR019514), Vacuolar protein sorting-associated protein 54 (InterPro:IPR019515); Has 316 Blast hits to 252 proteins in 92 species: Archae - 0; Bacteria - 2; Metazoa - 200; Fungi - 2; Plants - 68; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr2:11877654-11885238 | Forward length=1124
E-Value2E-45
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.3681060421135
Replicate 22.7111054964743
Replicate 31.9536796698729
Condition 2: 8 Hour
Replicate 13.2530256415966
Replicate 25.1189823158697
Replicate 34.6967121841484
Condition 3: 24 Hour
Replicate 13.2397072973339
Replicate 23.7452908960913
Replicate 31.8168421817245


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_28250.p2 GENE.S_Transcript_28250~~S_Transcript_28250.p2 ORF type:3prime_partial len:236 (+),score=45.19,DUF2450|PF10475.5|7.7e-11 S_Transcript_28250:1392-2096(+)
ATGTTCTTGTGTTTTTTTGTGCTTGTAATCTCTAACATGGTTCCTCCTTGCTTGAGATTCAGTTCCAGACTTACATACAGCGACTTGTGCTTCCAAATTCCAGAATCTAAGTTCAGACATTGTTTACTAAGAACATTAGCTGTACTTTTTGGGTTGATGTGTTCATATTATGCAATATTGAGCTTTCAGTCAGAGAACAAGAGGCCAAGCGAGGTTGAGCAAACAAATATTGCGTCAGTAAGTTGTGAGTCTAGAGTGGATAGTGGATCAGAAGCAGCTGCTCCTGGTGAAAAGGAGCTTTTGTCTTCTGCTGGTGATTGTGCAACAAGAACCTCATCAGCAGATAATTCAGGAACTAATGGCTCCAATATTGTGAACGCGTTTGATCAGTCACTGGACGATAGTGCTGCTTCCAGCAGTGGATCTCCATGGTATGAGCTGCGAAGAGATGCTACAGCTCTTGTTTCACAGTCTCTACAGAGGGGACGCAAAAATCTTTGGCAGCTTACAACAAGTCGTGTGTCAGTATTGCTTTCATCATCTGCATATTGTTCTACAAGTATTCATCAGTTCCTCAGAAATTATGAGGATCTGAACATATTTATTTTGGCTGGGGAAGCTTTTTGTGGAACAGAAGCTGTGGAGTTCAGGAATAAGTTGAAGAGTGCATGTGAACAATACTACAGTAATTTTCATAAACAGAAT

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_28250.p2 GENE.S_Transcript_28250~~S_Transcript_28250.p2 ORF type:3prime_partial len:236 (+),score=45.19,DUF2450|PF10475.5|7.7e-11 S_Transcript_28250:1392-2096(+)
MFLCFFVLVISNMVPPCLRFSSRLTYSDLCFQIPESKFRHCLLRTLAVLFGLMCSYYAILSFQSENKRPSEVEQTNIASVSCESRVDSGSEAAAPGEKELLSSAGDCATRTSSADNSGTNGSNIVNAFDQSLDDSAASSSGSPWYELRRDATALVSQSLQRGRKNLWQLTTSRVSVLLSSSAYCSTSIHQFLRNYEDLNIFILAGEAFCGTEAVEFRNKLKSACEQYYSNFHKQN

Click here to download the sequence:
Link to NCBI Protein BLAST