Transcript Information: S_Transcript_28285.p1


Annotated TAIR IDAT5G08710.1
Annotated Gene NameRegulator of chromosome condensation (RCC1) family protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:2834858-2837866 | Reverse length=434
E-Value2.7E-207
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 115.047538081574
Replicate 217.423417921589
Replicate 315.598762762298
Condition 2: 8 Hour
Replicate 118.335849618469
Replicate 219.758314920132
Replicate 321.216240840472
Condition 3: 24 Hour
Replicate 115.413913117195
Replicate 217.792151144048
Replicate 320.036203499391


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_28285.p1 GENE.S_Transcript_28285~~S_Transcript_28285.p1 ORF type:complete len:428 (+),score=78.52,RCC1|PF00415.14|2.9e-09,RCC1|PF00415.14|1.9e-09,RCC1|PF00415.14|2.7e-11,RCC1|PF00415.14|1.5e-07,RCC1|PF00415.14|4.7e-05,RCC1|PF00415.14|2.6e-13,RCC1|PF00415.14|20,RCC1|PF00415.14|3.4e-05,RCC1_2|PF13540.2|1.6e+04,RCC1_2|PF13540.2|4.7e-08,RCC1_2|PF13540.2|2e-10,RCC1_2|PF13540.2|0.0024,RCC1_2|PF13540.2|0.006,RCC1_2|PF13540.2|7.5e-12,RCC1_2|PF13540.2|0.018,RCC1_2|PF13540.2|15 S_Transcript_28285:184-1467(+)
ATGGTCACCATGTGGCTTAGAACGTACGCTAAGTTCCACTACAAATTAGCAGCTCAAAACACTAAGCTAGGGTTAGGGTTTCGATCATCAAGATGTTATTCAACCGGAGAAAGAGGAGGAAAAACATTCGCCGCGCTTTGGGGAAATGGCGATTTTGGAAGGCTTGGCCTTGGGACTGTCAATTCTCAGTGGAAACCCGTCGTTTGCTCTGCTTTTAATGGCGATTATCTTCGCTCCATTGCTTGTGGTGGTGCTCACACACTTTTCCTCACAGAATCTGGGCGGGTATATGCCTCTGGCCTCAATGATTTCGGACAGCTTGGGATTTCGGATGATTTGGAATACGCAATGGAACCACGAAAAGTTGCTGGAATTGAGAAAGAGATCAGACATATATCAGCTGGCTACTGTCATTCATGTGCGATTACAGTGGATGGGGAGCTCTACATGTGGGGAAAGAACACTAATGGACAGCTTGGCATTGGCAAGAGTGCACCCAATGTTGTTCCTAGGCCAGTCAAAGTTGAATATTTGACCGGGATGATCGTTGAAATGGCTGCTTTAGGTTCAGAGCATTCCATTGCTGTCACGGATGAAGGTGTTGCCTTGAGCTGGGGAGCAGGTAGTTCGGGAAGACTTGGTCATGACCGCCGTTCAAGCTTGTTAGGCTTTCTAAGCAGCGTCAGTGAATATACACCAAGGCTCATCAAGAGACTTGAAGGGGTTAAGGTCAAAGCTGTTGCCGCTGGACTGCTGCATTCAGCTTGTATTGATGAAAATGGCAGCGTCTTTGTCTTTGGTGAGAGAGCAGTGGACAAGCTTGGCTTTGGAAATTCAGACTATGCTACTGGGCCATCAAAGGTGTCAGAACTGCCGTTTTCAGAAGAAGTTGCCTGTGGTGGTTATCACACTTGTGTCATAACAAGAAATGGAGAGCTATACACATGGGGTTCTAATGAAAATGGGTGTCTCGGCATTGGCCGTACGGATGTCATCCATTCCCCCGAGAGAGTTGATGGGCCATTCTTAAGGCTATCAGTGAAGAAGGTTTCTTGTGGTTGGAAGCACACAGCTGCGATTTCCGATGGGCATGTATTCACATGGGGTTGGGGAGGTTCTCATGGTACATTTTCAGTGGATGGACAATCTTCTGGTGGACAGTTGGGCCATGGAAATGATGTTGATTACATTGAACCAATGATGGTTGATTTTGGCAATGACGTGAAGGCATTGCAAGTTTCATGTGGATTCAATCACACAGGTGCGATATTTGAATACAAGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_28285.p1 GENE.S_Transcript_28285~~S_Transcript_28285.p1 ORF type:complete len:428 (+),score=78.52,RCC1|PF00415.14|2.9e-09,RCC1|PF00415.14|1.9e-09,RCC1|PF00415.14|2.7e-11,RCC1|PF00415.14|1.5e-07,RCC1|PF00415.14|4.7e-05,RCC1|PF00415.14|2.6e-13,RCC1|PF00415.14|20,RCC1|PF00415.14|3.4e-05,RCC1_2|PF13540.2|1.6e+04,RCC1_2|PF13540.2|4.7e-08,RCC1_2|PF13540.2|2e-10,RCC1_2|PF13540.2|0.0024,RCC1_2|PF13540.2|0.006,RCC1_2|PF13540.2|7.5e-12,RCC1_2|PF13540.2|0.018,RCC1_2|PF13540.2|15 S_Transcript_28285:184-1467(+)
MVTMWLRTYAKFHYKLAAQNTKLGLGFRSSRCYSTGERGGKTFAALWGNGDFGRLGLGTVNSQWKPVVCSAFNGDYLRSIACGGAHTLFLTESGRVYASGLNDFGQLGISDDLEYAMEPRKVAGIEKEIRHISAGYCHSCAITVDGELYMWGKNTNGQLGIGKSAPNVVPRPVKVEYLTGMIVEMAALGSEHSIAVTDEGVALSWGAGSSGRLGHDRRSSLLGFLSSVSEYTPRLIKRLEGVKVKAVAAGLLHSACIDENGSVFVFGERAVDKLGFGNSDYATGPSKVSELPFSEEVACGGYHTCVITRNGELYTWGSNENGCLGIGRTDVIHSPERVDGPFLRLSVKKVSCGWKHTAAISDGHVFTWGWGGSHGTFSVDGQSSGGQLGHGNDVDYIEPMMVDFGNDVKALQVSCGFNHTGAIFEYK*

Click here to download the sequence:
Link to NCBI Protein BLAST