Transcript Information: S_Transcript_28288.p1


Annotated TAIR IDAT3G13980.1
Annotated Gene Nameunknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G54200.1); Has 1485 Blast hits to 418 proteins in 98 species: Archae - 0; Bacteria - 6; Metazoa - 246; Fungi - 61; Plants - 107; Viruses - 6; Other Eukaryotes - 1059 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr3:4619189-4620262 | Reverse length=357
E-Value5E-10
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.2825542763942
Replicate 20.93035859579882
Replicate 30.44440327912291
Condition 2: 8 Hour
Replicate 12.3123917211349
Replicate 21.6172420703417
Replicate 32.3113569692148
Condition 3: 24 Hour
Replicate 10.92116978574795
Replicate 20.54611594159873
Replicate 30.60776010614738


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_28288.p1 GENE.S_Transcript_28288~~S_Transcript_28288.p1 ORF type:5prime_partial len:166 (+),score=19.99 S_Transcript_28288:1-498(+)
CTCAGCAAAACGCCGTCGTCTCGAGGAAAATCAAGCACCAGTAGCACCGCCACCACCACCACCACAACAACCACCACCACGAAGCGTTCGGTGAGATTCTATCCAGTAAGCGTAATCGTCGACGAAGATTCTAGACCTTGCGGCCATAAATCCGTGCTGAAAGACGATCACTACGATTTCTCGAAACCTCTGATTTCGAATCATGAGAACAATAATAATCAGAGGAACATGAGGAGAGAGAAAGAGATCGATACGTTGATGATGATGATAAAGAGGAACTGCGAAGAGCGTAGAGTGACGAGATTCAATTGTGAAGAATCAGATGAAGAGATGAAGATAATAAATGAGAATGATGGAGGAGAAAGTTGTGCGAGTTCGGATTTGTTTGAGTTGGAGAATTTGAGTTCCATTGGTGTTGGTGTTGGTGTTGGTGTAAGTCGTTATAGTGAAGAGTTGCCGGTGTACGGTACCACCACTTTGGACAGCCTAACGGCTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_28288.p1 GENE.S_Transcript_28288~~S_Transcript_28288.p1 ORF type:5prime_partial len:166 (+),score=19.99 S_Transcript_28288:1-498(+)
LSKTPSSRGKSSTSSTATTTTTTTTTTKRSVRFYPVSVIVDEDSRPCGHKSVLKDDHYDFSKPLISNHENNNNQRNMRREKEIDTLMMMIKRNCEERRVTRFNCEESDEEMKIINENDGGESCASSDLFELENLSSIGVGVGVGVSRYSEELPVYGTTTLDSLTA*

Click here to download the sequence:
Link to NCBI Protein BLAST