Transcript Information: S_Transcript_28548.p1


Annotated TAIR IDAT1G17360.1
Annotated Gene NameBEST Arabidopsis thaliana protein match is: COP1-interacting protein-related (TAIR:AT1G72410.1); Has 9949 Blast hits to 7480 proteins in 576 species: Archae - 12; Bacteria - 1007; Metazoa - 3636; Fungi - 982; Plants - 444; Viruses - 50; Other Eukaryotes - 3818 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:5947441-5951399 | Forward length=1061
E-Value7E-22
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 120.62133116347
Replicate 221.959305553962
Replicate 319.757602821268
Condition 2: 8 Hour
Replicate 113.563428363055
Replicate 213.389530424152
Replicate 313.797312239622
Condition 3: 24 Hour
Replicate 125.881883535291
Replicate 224.364660475135
Replicate 326.23944394491


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_28548.p1 GENE.S_Transcript_28548~~S_Transcript_28548.p1 ORF type:complete len:1066 (+),score=271.26 S_Transcript_28548:340-3537(+)
ATGGAGGCTGAAATAGCTCTTGATGTACCTTTGGACTATGTTTCCTTCCAAATTTTGCCTGAAAACAGGTATGAGGCATATATCTGTAGCGACGAGAAAGAGGAAATCATGGGACATGGTTCTCTTGATGAACTTATGGAGCACTTACCCAACGTAAAGGATCAACTTGCTGAAGGATCTCGTAGCAGTAGATTAGAGTTACCAGGCAATGTGAATCAAGAGGCATGGTTCACGAAAGCCACATTACAAAGGTTTCTTCATATAGTTGGTTCACCTGATTCACTAAAGAAATCTGTTGCTATAAGCAATGAGATGTCCCAGTTGAAGGAAACAAGAAAGTTTCACCTTTCTTTATATCAAAAGGCTGGAGATGGGATTATGTCATCTGATAATTCAAAGAATGAGTTGCTGCGGGCAGTGGACTCCAGACTTGCAGCTCTGACAGAAGAACTAGTTTCAACCTTCAGCTTGGAAGCAGGAACTTCATTATCTTCTCAAGAGTTGATTAATCTGCGAAAATTCTGTCAACATTTTGGAGATGTAAATATCAGAAATCTATTGTCCAACTTGCCAGAAACGAGCCAAAAAAGCCAGACTGTTGTTCCCCAGGATAGTAAGGAGTCCTCTGGTCCAGTTATGTCGAAGCATGAATATGTAAAGAAGACAGGTGAAAAAGTTCAAATTTCAGGATCATCAGACTCAGTTCAAGCCGTAAAATATAATGCATCCCCGGCCAAAGCTGCCGAGCTTGAGAGGCAAAGCTCGACAGAAAGCGATGACTCATCTTTCTCGAGTGAGGATGATCAACCACCTGTTGAAAGAAGTAGACCTCTTATAAGATCTGCGTCTCCCAGAAGATCAGCATCTCCCATGAGAAGGATCCAAGTCGGAAGGTCAGGGCCTCGTCGGACCCCTGCCCTGACGATTAAGAGCCTCACACACTTTCCTGCCAGAGAACGGATTCCATCTTACAGGGACACAAGTAATGACGATCTATTAGAAGGATCTGAGGAACCAAACAAAAAGACTGAGGTCAATGTAACCCGTATGAGTGTTCAAGATGCTATTAGTCTATTTGAAAGCAAGCAGAGAGATCAGGTAGTTGACCCTCAGAAAAAGAAGTCAGTTACTGATAATGCCACAAATGCCAACAAGTCTGTTTTGAGAAGATGGAGCTCAGGGATGGGAGAGTCCCAAAAGGCCCTTAGTCAGAACATTTCAGAGCATCAAGCTTCAGAGGATAGCTTGAATTTAGGGGATGAAGATGGTGTGAAGAGTACAGAAGTAAGACAACAAACAGATTTTGCTTTTGGAAATCCAGAATCAGAGGAAAAGGTTGAAGTAGGTACTGAATCAGAGACAAGTGAAAATTCTGCATCAAATCCGAATGAAGATGATGTTCAAGAATCTCAAGTTGAGAGGACAAGTGAAAAGTTGGATTCAGCTGAATGGAGTAGGCAGAAGGAAGCCGAATTGAGCCAGATGCTGATGAAGTTTGCACAGTTTAATCAGAGCAACCATAAGATTTCTGAGCCTAACAATAACAACAACCGGAATTCAAGCTTGGAGCAAAGGTGTGTTTCTGGTCGTCACAAGGAGAGAACGGATGAGAAACTTAAAGGGGAAAATGCTGGAAAGAAGGTAGAGAAACAGACAGAGATTAGAGCGAAACAGAAAATTGTAGATAGGCCAAAGACAGAAAAATCTTCTCCAAAGGTTAGTGATGTAGGAAAGAAACAAACTACGAGCAGAATTCCAAGTCTTACCAAAACTACACCAGTGTCTTCAAACTCCAAAAAGGAAGCCCCAAGACCTGCCGTGGCAAAGAAGGCTCCGTCTAAATCTTCTTCCCTGCCAGCTACTAGGAAGTCATGGCCATCGACTCCATCACCAAGGGTCACAGGGACATTACCCACTAAAAGTCTGACAGGTACACCTTCTGCAACTACAGCACCTCGTCAGAAATCCCAGTCACTAGCACTTCTTCAGAAATCCCAGTCACCAGCAATTCATCAGAAACCCCAGTCACCAGCATCACTATCAAGACCAAGTCCGAAATTGGAAAGATTGCATCAGCAGCCGAAAGAAGTGAAAAGGCCGCAGGTTGATGCAAAAAAGAGTTTCAAGAAAATTGATGAAAGTAAGAATCTCATCCTACCAAAAAATGGGAAAACAACAAAACCAAAAACCAAAACAAAAACTGCTGGAGTTCCTGAAGATGCTTCTGCTACCAGTCCAGTCAAAGCAATCGTGTGCAAGAAGGTTACCAAGAGGAGCAGTGTGGTTCCACTTGAGGCAAAGCCATCTACTCGCAAGGCGCCTGGAACTAGCCCTGCAAAAAAACCAACGGTTCAAACGACAGAGGTTCCTGTTCCTGCTCAGGCCGAAGAAACTGTAAGCAAGTGTGATAATCCCATTAACATTCAAGAGAATGCTGGAGCTATCATTTCTGATACAGTTGATCAGGTGGAGGGAAGTCCAGTTTTGGAGGCCGAGAATGGTCATCTCGAGCAAGAAAAAGAACTGGAAACTGAAAAGGCTGAAAATGGCAGCGAAGAGAAGGCATCTGATGATGCCCCTGTTGAAGTTGCTGAAAGAATGGAGTCACCAATGGAGATTCAGCCTGAATCAGAACCACTGATCTCACCGACAGCTTGGGTGGAAAACAATCACCAAGATCTATCTATTCCGAGTGGTAACAGCTCTGCACCATCTCCTCCCAATCATGATGTGGTAGCCCCTTCTGAACCCCGGGTCCGTCATTCACTGTCACAGATGCTTCTTGAAGAAAGCTGTGAACCAGACATAATTGAGTGGGGAAATGCTGAAATTCCTCCTACCATGGTCTATCAGAAAGACGCTCCCAAAGGCTTGAAGAGGCTTTTGAAATTTGCTCGGAAGAATAAGGGAGAAGCGAATGGAGCTGCTTGGGCTAGCCCATATACCTCTGATGGTGAGGACGATGGTGATGAATATAGAACCCTTGGTAAGAGAAATTCAGACAATCTGCTGAGAAAGGTTGCACTCCATTCGAAGAACTATGGAGAAGGTTTCCTGTCAGACTCTGAACCACTATCTGCACGATCAAATGCAAGCAATAGCTCTGCTCGAAGTTCAAACAAATTGCAGGAAGGCCACGCCTCAAAAGGATCAAGATCATTCTTCTCTCTGTCAGCATTCCGTGGGAGCAAAAGTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_28548.p1 GENE.S_Transcript_28548~~S_Transcript_28548.p1 ORF type:complete len:1066 (+),score=271.26 S_Transcript_28548:340-3537(+)
MEAEIALDVPLDYVSFQILPENRYEAYICSDEKEEIMGHGSLDELMEHLPNVKDQLAEGSRSSRLELPGNVNQEAWFTKATLQRFLHIVGSPDSLKKSVAISNEMSQLKETRKFHLSLYQKAGDGIMSSDNSKNELLRAVDSRLAALTEELVSTFSLEAGTSLSSQELINLRKFCQHFGDVNIRNLLSNLPETSQKSQTVVPQDSKESSGPVMSKHEYVKKTGEKVQISGSSDSVQAVKYNASPAKAAELERQSSTESDDSSFSSEDDQPPVERSRPLIRSASPRRSASPMRRIQVGRSGPRRTPALTIKSLTHFPARERIPSYRDTSNDDLLEGSEEPNKKTEVNVTRMSVQDAISLFESKQRDQVVDPQKKKSVTDNATNANKSVLRRWSSGMGESQKALSQNISEHQASEDSLNLGDEDGVKSTEVRQQTDFAFGNPESEEKVEVGTESETSENSASNPNEDDVQESQVERTSEKLDSAEWSRQKEAELSQMLMKFAQFNQSNHKISEPNNNNNRNSSLEQRCVSGRHKERTDEKLKGENAGKKVEKQTEIRAKQKIVDRPKTEKSSPKVSDVGKKQTTSRIPSLTKTTPVSSNSKKEAPRPAVAKKAPSKSSSLPATRKSWPSTPSPRVTGTLPTKSLTGTPSATTAPRQKSQSLALLQKSQSPAIHQKPQSPASLSRPSPKLERLHQQPKEVKRPQVDAKKSFKKIDESKNLILPKNGKTTKPKTKTKTAGVPEDASATSPVKAIVCKKVTKRSSVVPLEAKPSTRKAPGTSPAKKPTVQTTEVPVPAQAEETVSKCDNPINIQENAGAIISDTVDQVEGSPVLEAENGHLEQEKELETEKAENGSEEKASDDAPVEVAERMESPMEIQPESEPLISPTAWVENNHQDLSIPSGNSSAPSPPNHDVVAPSEPRVRHSLSQMLLEESCEPDIIEWGNAEIPPTMVYQKDAPKGLKRLLKFARKNKGEANGAAWASPYTSDGEDDGDEYRTLGKRNSDNLLRKVALHSKNYGEGFLSDSEPLSARSNASNSSARSSNKLQEGHASKGSRSFFSLSAFRGSKS*

Click here to download the sequence:
Link to NCBI Protein BLAST