Transcript Information: S_Transcript_287379.p1


Annotated TAIR IDAT5G41790.1
Annotated Gene NameCOP1-interactive protein 1
Annotated Gene Symbol(s)CIP1
Annotation TypeHomolog
Chromosome Positionchr5:16727530-16732391 | Forward length=1586
E-Value4E-41
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 125.773143208035
Replicate 225.065417722147
Replicate 324.881324420479
Condition 2: 8 Hour
Replicate 11.9348480366629
Replicate 21.4561558286213
Replicate 32.1862407799981
Condition 3: 24 Hour
Replicate 130.93614663954
Replicate 229.145572283587
Replicate 329.251601795283


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_287379.p1 GENE.S_Transcript_287379~~S_Transcript_287379.p1 ORF type:complete len:507 (-),score=148.60,KIP1|PF07765.8|6.1e-11,KIP1|PF07765.8|1.2e+03,KIP1|PF07765.8|3.1e+02,KIP1|PF07765.8|3.2e+03,KIP1|PF07765.8|3.7e+02,ATG16|PF08614.7|2.9e+03,ATG16|PF08614.7|0.00077,ATG16|PF08614.7|0.19,ATG16|PF08614.7|0.03,EzrA|PF06160.8|2.5e+02,EzrA|PF06160.8|5.9,EzrA|PF06160.8|6.7e-07,EzrA|PF06160.8|0.7 S_Transcript_287379:199-1548(-)
ATGGAGGAGAAGAAGAAAAAGATATTGGATCTCCTGGAAAGCCATGATGAAAATGATGGAAACCAAATTCATGAATCAAAAAAAGGGCCAATCACGGAGCTCCTTGAGGAATTCCACAGACACTATGAATCACTTTTTTCTCACTATGATCATCTAGCCGGGGAACTCAAGGACAAAGTTGACAAACATCAGCTGAAGAAAGAGACGTTCTCTTCTGACTCAGACGCAGGCTCAGACTCCGAGCATGGTGATTCCACCAATGGCAATGATGGAAATGTCGAGAATGATATTCTTCCATCTGCAGCAATAGATGGGCTCCAGAAAGAGCTTGAAGCAGTGAACACAGAGGTGTCGGACCTCAAGAACAAGTTGGCAGCCGTAAGCAATGAGAAAGCTACTCTTGAATCAGACTATATGACAATGTCAAGCAAGCTAGAGAATTCCGAAAGAAGTGTTGAAGAATTGAAGGTAGAAGCTGACAGATTAGTGGCAGAGAACGAAGAACTAAGAATGAGAGTAGAGATTGCAGCTAAGACAGAAATTGAACTGAATCAACAAATTGAAGAACTGAAAAAGGAGAGAGATGATCTAGTCATTGCAAATGAAGATGCCATGAAAAGGGTTGAAGACGGGAACCAAAGTGTTGAAAGCTTCAAAACCCAGGTTGATCAGTTGCAGATTGAGAAGCAGAGCCTCGAGCTTGAACTGGGGACCGTCAAGCAAAACGTTTGTGATCTAGAAGAGGAATTGAACTCAGCAAAAGAGGAATCAGAGAACTTGAGAAAGTGTTTGAAGAAAGCTGTTGAAGAGGAAGACAAGTATCAGGAGGAGTGCAAAATGTTAGAAGACAAGATCAGCAGACTTTCTCACTCACTTGCAGCTAACCATGAAGGATATCGTGAAATGATTATGAATATCTCAGAGAAAGTAAACAATTCACTCACTCAAATGGAATCTATCATGACCAGCCAGTTTGAGGAGGACCACGACAAGTTTTCTAACAACATTTTCAAGATATCCCAAGAGATTCAGGATGTAAAGCGTTGTTTAACAGGAAAGAATATCGAAAGAGAACAGCTGAAGAAGGAGCTAGGCGATGTAAATGATAGGGTCAAGAAGCAAAATGGAGAGATGAAGGAGTTGCAACGTGCAATTAGCCAACTGACGAAAGCAGCAGGAGAGCTCAATGTGACATTGAAGGAAAAAGATGAGCAACTTTCATCTCTTGCGGAGGAGAAACGCCAGGCCATCAGGCAACTGTGCTTATGGAGCGATAATCTCCAGGGTCACTATGATGAACTAAAGAGCATTGTGTCAAAGGCAACTTCAGAGAGGCGGGTGAGTAGATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_287379.p1 GENE.S_Transcript_287379~~S_Transcript_287379.p1 ORF type:complete len:507 (-),score=148.60,KIP1|PF07765.8|6.1e-11,KIP1|PF07765.8|1.2e+03,KIP1|PF07765.8|3.1e+02,KIP1|PF07765.8|3.2e+03,KIP1|PF07765.8|3.7e+02,ATG16|PF08614.7|2.9e+03,ATG16|PF08614.7|0.00077,ATG16|PF08614.7|0.19,ATG16|PF08614.7|0.03,EzrA|PF06160.8|2.5e+02,EzrA|PF06160.8|5.9,EzrA|PF06160.8|6.7e-07,EzrA|PF06160.8|0.7 S_Transcript_287379:199-1548(-)
MEEKKKKILDLLESHDENDGNQIHESKKGPITELLEEFHRHYESLFSHYDHLAGELKDKVDKHQLKKETFSSDSDAGSDSEHGDSTNGNDGNVENDILPSAAIDGLQKELEAVNTEVSDLKNKLAAVSNEKATLESDYMTMSSKLENSERSVEELKVEADRLVAENEELRMRVEIAAKTEIELNQQIEELKKERDDLVIANEDAMKRVEDGNQSVESFKTQVDQLQIEKQSLELELGTVKQNVCDLEEELNSAKEESENLRKCLKKAVEEEDKYQEECKMLEDKISRLSHSLAANHEGYREMIMNISEKVNNSLTQMESIMTSQFEEDHDKFSNNIFKISQEIQDVKRCLTGKNIEREQLKKELGDVNDRVKKQNGEMKELQRAISQLTKAAGELNVTLKEKDEQLSSLAEEKRQAIRQLCLWSDNLQGHYDELKSIVSKATSERRVSR*

Click here to download the sequence:
Link to NCBI Protein BLAST