Transcript Information: S_Transcript_287553.p1


Annotated TAIR IDAT5G03340.1
Annotated Gene NameATPase, AAA-type, CDC48 protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:810091-813133 | Reverse length=810
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.28013685510716
Replicate 20.82942817885394
Replicate 30.1664006263182
Condition 2: 8 Hour
Replicate 10.19240953669594
Replicate 20
Replicate 30.16026953086452
Condition 3: 24 Hour
Replicate 10.032849448858036
Replicate 21.0905894292378
Replicate 30.2275673179409


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_287553.p1 GENE.S_Transcript_287553~~S_Transcript_287553.p1 ORF type:3prime_partial len:665 (+),score=-27.96,AAA|PF00004.25|8.4e-47,AAA|PF00004.25|8.8e-48,CDC48_N|PF02359.14|1.8e-23,CDC48_N|PF02359.14|7e+03,RuvB_N|PF05496.8|6.3e-06,RuvB_N|PF05496.8|1.5e-05,AAA_2|PF07724.10|3.9e-06,AAA_2|PF07724.10|0.0017,AAA_16|PF13191.2|0.0011,AAA_16|PF13191.2|0.00042,AAA_17|PF13207.2|1.7e-05,AAA_17|PF13207.2|0.0069,AAA_5|PF07728.10|3.6e-05,AAA_5|PF07728.10|0.025,AAA_33|PF13671.2|5.8e-05,AAA_33|PF13671.2|0.0098,AAA_22|PF13401.2|0.012,AAA_22|PF13401.2|0.03,AAA_22|PF13401.2|1.8e+03,CDC48_2|PF02933.13|4.2e-09,TIP49|PF06068.9|1.4e+03,TIP49|PF06068.9|0.0014,TIP49|PF06068.9|0.023,AAA_18|PF13238.2|6.9e+03,AAA_18|PF13238.2|0.0086,AAA_18|PF13238.2|0.037,AAA_14|PF13173.2|0.0046,AAA_14|PF13173.2|0.036,AAA_25|PF13481.2|3.5,AAA_25|PF13481.2|0.42,AAA_25|PF13481.2|0.24,AAA_25|PF13481.2|8e+02,RNA_helicase|PF00910.18|0.41,RNA_helicase|PF00910.18|0.0024,Mg_chelatase|PF01078.17|0.038,Mg_chelatase|PF01078.17|0.021,IstB_IS21|PF01695.13|0.072,IstB_IS21|PF01695.13|0.035,AAA_19|PF13245.2|0.05,AAA_19|PF13245.2|0.087,Arch_ATPase|PF01637.14|0.21,Arch_ATPase|PF01637.14|22,Arch_ATPase|PF01637.14|0.35,Arch_ATPase|PF01637.14|1.9e+03,ABC_tran|PF00005.23|4,ABC_tran|PF00005.23|0.0092,Viral_helicase1|PF01443.14|2.5e+03,Viral_helicase1|PF01443.14|16,Viral_helicase1|PF01443.14|0.0018 S_Transcript_287553:64-2055(+)
ATGGCGGAGGAAGCTGGACCCTCGGGGGCAGCAAGCAAAGCAGACGGAGCTTCGAAGAAGGACTTCTCAACAGCGATCTTAGACCGCAAGAAGTCGCCCAACAGGCTCGTGGTCGACGATGCAATCAACGATGACAACAGCGTGGTTGCTCTGCATCCCACCACCATGGATACACTGCAGCTGTTCCGGGGAGACACAGTCCTCTTGAAGGGCAAGAAGCGGAAGGAGACAGTCTGCATCGTGTTGTCGGAAGACAATTGCGAGGAGCACAAGATCCGCATGAACAAGGTGGTCAGGTCCAACTTGCGTGTGCGTCTGGGCGACGTGGTCACCGTCCATCAGTGCGCAGACGTCAAGTATGGGCAGCGCATCCATGTTCTGCCCATCGATGACACTGTGGAGGGCCTGACTGGCAGCCTCTTTGACACGTTCCTCAAGCCATACTTCCTAGAGGCATACCGCCCAGTTCGCAAGGGCGACATCTTTCTGGCGCGCGGCGGCATGCGCTCCGTGGAGTTCAAGGTCATTGAGACAGACCCGCAGCCGTACTGCATCGTCGCGCCAGACACCGTCATCTACTGCGAGGGCGAGCCCATCAAGCGCGAGGACGAGGAGAAGCTCGACGAGGTGGGCTACGACGACGTCGGCGGCGTGCGCAAGCAGCTCGCGCAGATCCGGGAGCTCGTGGAGCTGCCGCTGCGGCACCCGACGCTTTTCAAGACGATCGGCGTCAAGCCGCCGAAGGGCATCCTGCTGTACGGGCCGCCCGGCAGCGGCAAGACGCTGATCGCGCGCGCCGTCGCGAACGAGACCGGCGCGTTCTTCTTCCTCATCAACGGCCCCGAGATCATGAGCAAGCTCGCGGGCGAGAGCGAGGGCAACCTGCGCAAGGCGTTTGAGGAGGCGGAGAAGAACTCGCCGGCCATCATCTTCATCGACGAGATCGACGCGATCGCGCCAAAGCGCGAGAAGACCAACGGCGAGGTCGAGCGCCGCATCGTGAGCCAGCTGCTCACGCTCATGGACGGCCTCAAGTCGCGCGCGCACGTCATCGTGATGGGCGCGACGAACCGGCCCAACTCGATCGACCCCGCGCTGCGCCGCTTTGGCCGCTTTGACCGCGAGGTTGATATTGGCGTGCCCGACGAGATCGGGCGGCTGGAGGTGATGCGCATCCACACGAAGAACATGAAGCTCGACGACAACGTGGAGCTCGAGGCGGTCAGCAAGGAGACGCACGGCTACGTCGGCGCCGACCTCGCGGCCCTCTGCACGGAGGCCGCGCTGCAGTGCATCCGCGAGAAGATGGACGTGATCGACCTCGAGGACGATGAGATTGACGCCGAGGTGCTGGACAGCATGGCGGTCACGCAGGACCACTTCAAGACTGCGCTGGGCCATGCCAACCCGTCCGCGCTGCGCGAGACCGTTGTCGAGGTGCCCACCACCACCTGGGAGGACATTGGCGGCCTGGAGCCCGTCAAGGCGGAGCTGCAGGAGCTTGTGCAGTACCCTGTGGAGCACCCCGAGAAGTTCGAGAAGTTTGGCATGAGCCCCAGCAAGGGCGTGCTTTTCTACGGGCCGCCCGGCTGCGGCAAGACGCTGCTCGCCAAGGCGATCGCGAACGAGTGCCAGGCGAACTTCATCTCGATCAAGGGCCCCGAGCTGCTGACGATGTGGTTCGGCGAGAGCGAGGCGAACGTGCGCGACATCTTCGACAAGGCGCGCCAGAGCGCGCCGTGCGTGCTGTTCTTCGACGAGCTTGACTCGATCGCGACGCAGCGCGGCGCGAGCCAGGGCGACGCCGGCGGCGCCGGCGACCGCGTGCTCAACCAGATGCTGACCGAGATGGACGGCATCAACAGCAAGAAGACCGTCTTCATCATCGGCGCAACCAACCGCCCTGACATCATCGACCCCGCGCTCATGCGCCCCGGCCGCCTCGACCAGCTGATCTACATTCCCCTGCCAGACCAGGGCAGCCGGCGCGCG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_287553.p1 GENE.S_Transcript_287553~~S_Transcript_287553.p1 ORF type:3prime_partial len:665 (+),score=-27.96,AAA|PF00004.25|8.4e-47,AAA|PF00004.25|8.8e-48,CDC48_N|PF02359.14|1.8e-23,CDC48_N|PF02359.14|7e+03,RuvB_N|PF05496.8|6.3e-06,RuvB_N|PF05496.8|1.5e-05,AAA_2|PF07724.10|3.9e-06,AAA_2|PF07724.10|0.0017,AAA_16|PF13191.2|0.0011,AAA_16|PF13191.2|0.00042,AAA_17|PF13207.2|1.7e-05,AAA_17|PF13207.2|0.0069,AAA_5|PF07728.10|3.6e-05,AAA_5|PF07728.10|0.025,AAA_33|PF13671.2|5.8e-05,AAA_33|PF13671.2|0.0098,AAA_22|PF13401.2|0.012,AAA_22|PF13401.2|0.03,AAA_22|PF13401.2|1.8e+03,CDC48_2|PF02933.13|4.2e-09,TIP49|PF06068.9|1.4e+03,TIP49|PF06068.9|0.0014,TIP49|PF06068.9|0.023,AAA_18|PF13238.2|6.9e+03,AAA_18|PF13238.2|0.0086,AAA_18|PF13238.2|0.037,AAA_14|PF13173.2|0.0046,AAA_14|PF13173.2|0.036,AAA_25|PF13481.2|3.5,AAA_25|PF13481.2|0.42,AAA_25|PF13481.2|0.24,AAA_25|PF13481.2|8e+02,RNA_helicase|PF00910.18|0.41,RNA_helicase|PF00910.18|0.0024,Mg_chelatase|PF01078.17|0.038,Mg_chelatase|PF01078.17|0.021,IstB_IS21|PF01695.13|0.072,IstB_IS21|PF01695.13|0.035,AAA_19|PF13245.2|0.05,AAA_19|PF13245.2|0.087,Arch_ATPase|PF01637.14|0.21,Arch_ATPase|PF01637.14|22,Arch_ATPase|PF01637.14|0.35,Arch_ATPase|PF01637.14|1.9e+03,ABC_tran|PF00005.23|4,ABC_tran|PF00005.23|0.0092,Viral_helicase1|PF01443.14|2.5e+03,Viral_helicase1|PF01443.14|16,Viral_helicase1|PF01443.14|0.0018 S_Transcript_287553:64-2055(+)
MAEEAGPSGAASKADGASKKDFSTAILDRKKSPNRLVVDDAINDDNSVVALHPTTMDTLQLFRGDTVLLKGKKRKETVCIVLSEDNCEEHKIRMNKVVRSNLRVRLGDVVTVHQCADVKYGQRIHVLPIDDTVEGLTGSLFDTFLKPYFLEAYRPVRKGDIFLARGGMRSVEFKVIETDPQPYCIVAPDTVIYCEGEPIKREDEEKLDEVGYDDVGGVRKQLAQIRELVELPLRHPTLFKTIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESEGNLRKAFEEAEKNSPAIIFIDEIDAIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREVDIGVPDEIGRLEVMRIHTKNMKLDDNVELEAVSKETHGYVGADLAALCTEAALQCIREKMDVIDLEDDEIDAEVLDSMAVTQDHFKTALGHANPSALRETVVEVPTTTWEDIGGLEPVKAELQELVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDIFDKARQSAPCVLFFDELDSIATQRGASQGDAGGAGDRVLNQMLTEMDGINSKKTVFIIGATNRPDIIDPALMRPGRLDQLIYIPLPDQGSRRA

Click here to download the sequence:
Link to NCBI Protein BLAST