Transcript Information: S_Transcript_28871.p1


Annotated TAIR IDAT4G23650.1
Annotated Gene Namecalcium-dependent protein kinase 6
Annotated Gene Symbol(s)CDPK6, CPK3
Annotation TypeOrtholog
Chromosome Positionchr4:12324967-12327415 | Reverse length=529
E-Value3.1E-285
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 120.342671807467
Replicate 220.634263614942
Replicate 317.912009865368
Condition 2: 8 Hour
Replicate 117.33646838731
Replicate 215.612009482399
Replicate 319.168927702321
Condition 3: 24 Hour
Replicate 117.955236969787
Replicate 217.527767945736
Replicate 319.27944041758


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_28871.p1 GENE.S_Transcript_28871~~S_Transcript_28871.p1 ORF type:complete len:556 (+),score=106.48,Pkinase|PF00069.21|9.5e-74,Pkinase|PF00069.21|1.2e+03,Pkinase|PF00069.21|6.1e+02,EF-hand_1|PF00036.28|6.3e-08,EF-hand_1|PF00036.28|0.00017,EF-hand_1|PF00036.28|6e-06,EF-hand_1|PF00036.28|3.4e-08,Pkinase_Tyr|PF07714.13|1.2e-28,EF-hand_7|PF13499.2|2.6e-12,EF-hand_7|PF13499.2|2.5e-12,EF-hand_6|PF13405.2|3.4e-06,EF-hand_6|PF13405.2|0.28,EF-hand_6|PF13405.2|3.2e-07,EF-hand_6|PF13405.2|0.00068,EF-hand_5|PF13202.2|1.8e-05,EF-hand_5|PF13202.2|0.0071,EF-hand_5|PF13202.2|0.0007,EF-hand_5|PF13202.2|0.0055,EF-hand_8|PF13833.2|0.00053,EF-hand_8|PF13833.2|5.7e-07,EF-hand_8|PF13833.2|4e-10,EF-hand_9|PF14658.2|0.027,EF-hand_9|PF14658.2|0.0057,EF-hand_4|PF12763.3|2.4e+02,EF-hand_4|PF12763.3|0.021,EF-hand_4|PF12763.3|0.021,SPARC_Ca_bdg|PF10591.5|0.17,SPARC_Ca_bdg|PF10591.5|0.018,Kinase-like|PF14531.2|7.1,Kinase-like|PF14531.2|0.0018,EFhand_Ca_insen|PF08726.6|7.4e+02,EFhand_Ca_insen|PF08726.6|0.52,EFhand_Ca_insen|PF08726.6|0.18 S_Transcript_28871:100-1668(+)
ATGGGCAACTGTAATGGCCAACCTTCCCGACCCTACACAACTGATGACACCACCACCACAACCACCAACTATTCTCCCTCCAAACCCTCACCCCAGCCCAAACCACAACCAGCCCACCGGGCCACCACCACAACAACAGGCTCATCATCATCATCCTCCGGCAAGATCGGCCGCATATTGGGCCGCCCAATGGAAGATGTCCGGTCCAACTACATTTTCGGGCGCGAGCTAGGCCGAGGCCAATTCGGGGTTACCTACTTAGTAACCCACAAAGACACCAAACAACAGCTGGCTTGCAAATCAATAGCCACTCGGAAACTTATCAACCAAGATGACATGGATGACGTACGCCGTGAGGTCCAGATCATGCACCACCTGACGGGTCACCGTAATATTGTCGAATTAAAGGGCGCTTATGAGGACCGCCATTCAGTTAATCTAGTTATGGAGCTTTGTGCTGGCGGTGAGCTCTTTGATCGGATTATTGCTAAGGGTCATTACTCTGAACGTGAAGCTGCTAAATTGTTTCGCCAAATCGTTACTGTTGTTTATAATTGTCATTCTATGGGAGTTATTCATCGAGATCTTAAGCCTGAGAATTTCCTCTTTCTCAGCCCTGATGAAGATTCTCCTCTTAAAGCTACTGATTTTGGCCTCTCTGTCTTCTTCAAACCAGGAGAAGTCTTCAGAGACCTTGTTGGTAGTGCATATTATGTTGCTCCTGAGGTATTGCGTCGTAATTATAGCGCTGAAGCAGATATTTGGAGTGCTGGGGTGATACTATACATCCTCCTTAGTGGTGTTCCACCATTCTGGGGAGAGAATGAGCAGGGTATTTTTGATTCTATTGTACGGGGAGACCTTGATTTCTCATCTGAACCATGGCCCTCAATTTCCCGCAGCGCTAAAGATCTTGTGAAGAAAATGTTACGACAGGATCCCAAGGAAAGGCTTTCTGCTCTTGATGCTTTAAATCATCCATGGATGAGAGAAGATGGAGTTGCTTCTGATAAGCCAATTGATATTGCTGTTTTGACTAGAATGAAGCAGTTCAGGGCAATGAACAAACTGAAAAAAGTCGCTCTGAGGGTAATTGCAGAGAACCTCTCTGAAGAAGAAATTATGGGTCTCAAGGAAATGTTCAAATCTATGGATACAGACAACAGTGGGACCATTACTTTTGAAGAGTTAAAGGCTGGTCTCCCAAAACTGGGAACTAAGCTTTCTGAGAGTGAAGTGAGGCAATACATGGAAGCGGCTGATGTGGATGGGAATGGAACAATTGATTACATGGAGTTTATCACAGCCACAATGCATATGAATAGGTTGGAAAGGGAAGACCATTTGTACAAGGCTTTTGAATATTTCGATGAGGACAAGAGCGGGTACATAACAATGCAAGAGTTAGAACAAGCCTTGAAGAAATATAACATGGGTGATGAGAAAACAATACGGGAGATACTTGCAGAAGTTGACTCTGATAATGATGGTAGAATCAACTATGAAGAATTCGTAGCTATGATGAAGAAAGGCAACCCTGATTTGGGTCAAAAGAGGAGGAGGAGATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_28871.p1 GENE.S_Transcript_28871~~S_Transcript_28871.p1 ORF type:complete len:556 (+),score=106.48,Pkinase|PF00069.21|9.5e-74,Pkinase|PF00069.21|1.2e+03,Pkinase|PF00069.21|6.1e+02,EF-hand_1|PF00036.28|6.3e-08,EF-hand_1|PF00036.28|0.00017,EF-hand_1|PF00036.28|6e-06,EF-hand_1|PF00036.28|3.4e-08,Pkinase_Tyr|PF07714.13|1.2e-28,EF-hand_7|PF13499.2|2.6e-12,EF-hand_7|PF13499.2|2.5e-12,EF-hand_6|PF13405.2|3.4e-06,EF-hand_6|PF13405.2|0.28,EF-hand_6|PF13405.2|3.2e-07,EF-hand_6|PF13405.2|0.00068,EF-hand_5|PF13202.2|1.8e-05,EF-hand_5|PF13202.2|0.0071,EF-hand_5|PF13202.2|0.0007,EF-hand_5|PF13202.2|0.0055,EF-hand_8|PF13833.2|0.00053,EF-hand_8|PF13833.2|5.7e-07,EF-hand_8|PF13833.2|4e-10,EF-hand_9|PF14658.2|0.027,EF-hand_9|PF14658.2|0.0057,EF-hand_4|PF12763.3|2.4e+02,EF-hand_4|PF12763.3|0.021,EF-hand_4|PF12763.3|0.021,SPARC_Ca_bdg|PF10591.5|0.17,SPARC_Ca_bdg|PF10591.5|0.018,Kinase-like|PF14531.2|7.1,Kinase-like|PF14531.2|0.0018,EFhand_Ca_insen|PF08726.6|7.4e+02,EFhand_Ca_insen|PF08726.6|0.52,EFhand_Ca_insen|PF08726.6|0.18 S_Transcript_28871:100-1668(+)
MGNCNGQPSRPYTTDDTTTTTTNYSPSKPSPQPKPQPAHRATTTTTGSSSSSSGKIGRILGRPMEDVRSNYIFGRELGRGQFGVTYLVTHKDTKQQLACKSIATRKLINQDDMDDVRREVQIMHHLTGHRNIVELKGAYEDRHSVNLVMELCAGGELFDRIIAKGHYSEREAAKLFRQIVTVVYNCHSMGVIHRDLKPENFLFLSPDEDSPLKATDFGLSVFFKPGEVFRDLVGSAYYVAPEVLRRNYSAEADIWSAGVILYILLSGVPPFWGENEQGIFDSIVRGDLDFSSEPWPSISRSAKDLVKKMLRQDPKERLSALDALNHPWMREDGVASDKPIDIAVLTRMKQFRAMNKLKKVALRVIAENLSEEEIMGLKEMFKSMDTDNSGTITFEELKAGLPKLGTKLSESEVRQYMEAADVDGNGTIDYMEFITATMHMNRLEREDHLYKAFEYFDEDKSGYITMQELEQALKKYNMGDEKTIREILAEVDSDNDGRINYEEFVAMMKKGNPDLGQKRRRR*

Click here to download the sequence:
Link to NCBI Protein BLAST