Transcript Information: S_Transcript_28871.p2


Annotated TAIR IDAT4G09784.1
Annotated Gene NameFUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: histone deacetylase 15 (TAIR:AT3G18520.2); Has 120 Blast hits to 120 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 120; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr4:6162253-6162613 | Forward length=70
E-Value7E-15
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 16.6532503087951
Replicate 25.1295985721222
Replicate 36.0861029075882
Condition 2: 8 Hour
Replicate 15.2247206276976
Replicate 23.8591438903528
Replicate 35.5421203772952
Condition 3: 24 Hour
Replicate 17.7003214304344
Replicate 26.2325481834955
Replicate 33.594141327729


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_28871.p2 GENE.S_Transcript_28871~~S_Transcript_28871.p2 ORF type:complete len:400 (+),score=75.95,Hist_deacetyl|PF00850.15|3.3e-43 S_Transcript_28871:2856-4055(+)
ATGATACCGGAAGCAGTTGATTTGGGTTGTTCAGTGAATAGAATGACAGAAACTTTGTGTCAAATTGGAGTTAATGGTATAGCATGTGAGGACCTTAATGGAAAGCCAGAGAATGTTGCGAGTTCCTGCCATTGTTCTCATTCAAAGAGCAGGGAAGGAAATACATCAGCTATGACGACTGAAGGCATTCCCGTTGCTGAATGCAAAAAGGCAAGGCTCCAGAAAGAGTTAACACTGGAAGATATATACAGCAATCCAGATGACTTGGAGGATGATGAAGACGATAGTGATTGGGAACCCTTTCGGGAGCCTGTGGTGGTTGGAAAGTGGTTTTGTACCAACTGTACAATGGTTAACATTGAAGGTTTTGTCTTATGTGAGTCTTGTAAGGAGCACAAGGAATCTGAAATCCTTAAGCATGGGTTTTTCGCTTCATCGGTGCTACGAGGGGCTGGCGTTACTCAAATTGAGTCAGAAGTAATAGAAAGATATACAGAGTCACTCTCTGATGCTTCAGCTTCTGAATGCTCTACTATCATAGGTTTTGATGAGAGAATGTTATTGCACTCAGAAGTTGTAATGAAGCTACATCCACATCCTGAAAGACCAGACCGTCTTCGAGCAATCGCGGCTAGCCTCTCCACTGCAGGTATATTTCCTGGAAAATGTCGTGCAATTGCCGCAAGAGAAATAACGCAAGAAGAACTCCTTAAGGTACATTCTATGGAGCATATTGAAGCTGTTGAAGTTACTGGACAAATGCTTTCCAGTTACTTCACTCCTGACACATATGCAAATGAACATTCAGCGTGGGCTGCAAGGCTTGCTGCAGGTTTGTGTGCTGATCTTGCGTCAGAAATTTATTCAGGACGTGCGAGAAATGGATTTGCCCTGATTCGCCCCCCTGGTCATCATGCTGGTGTACACCAGTCCATGGGTTTCTGTCTTCACAATAATGCAGCAATTGCTGCATTAGCTGCTCAATTTGCAGGAGCCAAGAAGGTTTTGATTGTGGATTGGGATGTACACCATGGAAATGGTACACAAGAAATTTTTGATAGGAACAAGTCGGTAAGCTTTTTAGATTTCTGTTATTCTCTGGTCATCATGATAGGAACTTTCTTTTTTCTGCAAGGGAGCTTGCTTTTATGTATGCTTGTGTGCAAGCAACAGCACCAGTATTTTTGTTACTTAGCTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_28871.p2 GENE.S_Transcript_28871~~S_Transcript_28871.p2 ORF type:complete len:400 (+),score=75.95,Hist_deacetyl|PF00850.15|3.3e-43 S_Transcript_28871:2856-4055(+)
MIPEAVDLGCSVNRMTETLCQIGVNGIACEDLNGKPENVASSCHCSHSKSREGNTSAMTTEGIPVAECKKARLQKELTLEDIYSNPDDLEDDEDDSDWEPFREPVVVGKWFCTNCTMVNIEGFVLCESCKEHKESEILKHGFFASSVLRGAGVTQIESEVIERYTESLSDASASECSTIIGFDERMLLHSEVVMKLHPHPERPDRLRAIAASLSTAGIFPGKCRAIAAREITQEELLKVHSMEHIEAVEVTGQMLSSYFTPDTYANEHSAWAARLAAGLCADLASEIYSGRARNGFALIRPPGHHAGVHQSMGFCLHNNAAIAALAAQFAGAKKVLIVDWDVHHGNGTQEIFDRNKSVSFLDFCYSLVIMIGTFFFLQGSLLLCMLVCKQQHQYFCYLA*

Click here to download the sequence:
Link to NCBI Protein BLAST