Transcript Information: S_Transcript_288721.p1


Annotated TAIR IDAT5G16620.1
Annotated Gene Namehydroxyproline-rich glycoprotein family protein
Annotated Gene Symbol(s)PDE120, TIC40, ATTIC40
Annotation TypeOrtholog
Chromosome Positionchr5:5450808-5454256 | Forward length=447
E-Value3.6E-42
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.60829717108984
Replicate 20.3782192495574
Replicate 30.42154825333944
Condition 2: 8 Hour
Replicate 11.0967343591668
Replicate 21.4062304859257
Replicate 31.3398532780274
Condition 3: 24 Hour
Replicate 10.99862324528431
Replicate 20.9065524630539
Replicate 30.86475580817541


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_288721.p1 GENE.S_Transcript_288721~~S_Transcript_288721.p1 ORF type:5prime_partial len:175 (-),score=40.12,RPN13_C|PF16550.1|1.7e+03,RPN13_C|PF16550.1|2e-06 S_Transcript_288721:267-791(-)
CAGAGGGAGAGAGAGAGAGAGAGAGAGAGTTTTCACATATCACAAAAGAAAACCAGTGCAAAGAGCTATATTACGGATAGATCATCTCGCGCATGGTTGGATCTTCAAGCAGTTTCTCCAAAGCTTCGACATTCAACCCAGAACCTTTCTTTCCTTCATTTGAAGTTGAAGCCTCCTTTGAAGCAGCTCCATTTTGTACTACCTCAGCAAACTCAGCATCCATGGAAGGCTTCAACTTCAAATGAAGGAATGAAAGGTTCTGGGTTGAATGTCGAAGCTTTGGAGAAACTGCTTGAAGATCCAACCATGCGCGAGATGATCTATCCACATCTGCCTGAGGAGATGAGAAATCCAGAAACCATGAAATGGATGCTACAAAATCCATTATATCGTCAACAGCTACAAGACATGTTGGACAACATGACTGGAAGCAGTGAATGGAACAACAAAATGATGGAAACACTAAAAGATTTTAACTTCGATAACCCTGAAGTAAAGCAACAATTCGCCTGTGCTATTTCCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_288721.p1 GENE.S_Transcript_288721~~S_Transcript_288721.p1 ORF type:5prime_partial len:175 (-),score=40.12,RPN13_C|PF16550.1|1.7e+03,RPN13_C|PF16550.1|2e-06 S_Transcript_288721:267-791(-)
QRERERERESFHISQKKTSAKSYITDRSSRAWLDLQAVSPKLRHSTQNLSFLHLKLKPPLKQLHFVLPQQTQHPWKASTSNEGMKGSGLNVEALEKLLEDPTMREMIYPHLPEEMRNPETMKWMLQNPLYRQQLQDMLDNMTGSSEWNNKMMETLKDFNFDNPEVKQQFACAIS*

Click here to download the sequence:
Link to NCBI Protein BLAST