Transcript Information: S_Transcript_288994.p1


Annotated TAIR IDAT1G45474.1
Annotated Gene Namephotosystem I light harvesting complex gene 5
Annotated Gene Symbol(s)LHCA5
Annotation TypeHomolog
Chromosome Positionchr1:17179353-17180439 | Forward length=256
E-Value3E-36
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.45492309803727
Replicate 21.9799939346488
Replicate 30.47289066881027
Condition 2: 8 Hour
Replicate 10
Replicate 20
Replicate 30.45546682916627
Condition 3: 24 Hour
Replicate 10.093354202951257
Replicate 23.5835941381404
Replicate 30.64671908731067


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_288994.p1 GENE.S_Transcript_288994~~S_Transcript_288994.p1 ORF type:5prime_partial len:234 (+),score=-7.43,Chloroa_b-bind|PF00504.17|8.9e-38 S_Transcript_288994:3-704(+)
TTGCGCCGAGCAGCCGTTCGCGTGGTATACACTCGGGACATCATGACAACCGTAAGGAGTTTCAGCGCAGCGCCGACGCGCGCGGCTGGCGTCGCCGGTGCTCGCGCACGCAATGTTCAAGTACGAGCAGCAGACAGGCCTATGTGGTTCCCAGGCATGCCACCGCCGTCCCACTTGAGCGGCCAGATGGCCGGTGATTTTGGCTTCGACCCGCTTGGCCTCGGCAAGCAAGGCGAGGACCGCCTGAAGTGGTATGCGGAGGCTGAGAAGACCAACGCGCGGTGGGCGATGGCGGGCGTCGCCGGCATTGTCGGCCAGGAGCTGCTTGGCGTGTCGCCAAAGTGGTTCAACGCGGGCGCGAAGGACTACCCCATCGACTTCCTGCCCCTCCTCGCCATCGAGTTTGCCCTCTTCGGCTTCATCGAGCTCAAGCGCTACCAGGGCTTCAAGCGCACCGGCTCCAGCGGGGCGATCAACCAGTTCCCCTTTGATCCCGTGGGCATGAACAGCCCCAGCATGCAGCTGAAGGAGGTCAAGAACGGCCGCCTCGCAATGGTCGCCTTTGTCGGCTTCGCCGTCCAGGCGCTGGTGACGCGCGAGGGCCCAGTGGAGGGCTTGATGAACCACATCGCCAACCCCTTTGGCCACAACATCCTGACCAACGTCTACAACATCAACAAGTTCGTGACCAGCACCGGCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_288994.p1 GENE.S_Transcript_288994~~S_Transcript_288994.p1 ORF type:5prime_partial len:234 (+),score=-7.43,Chloroa_b-bind|PF00504.17|8.9e-38 S_Transcript_288994:3-704(+)
LRRAAVRVVYTRDIMTTVRSFSAAPTRAAGVAGARARNVQVRAADRPMWFPGMPPPSHLSGQMAGDFGFDPLGLGKQGEDRLKWYAEAEKTNARWAMAGVAGIVGQELLGVSPKWFNAGAKDYPIDFLPLLAIEFALFGFIELKRYQGFKRTGSSGAINQFPFDPVGMNSPSMQLKEVKNGRLAMVAFVGFAVQALVTREGPVEGLMNHIANPFGHNILTNVYNINKFVTSTG*

Click here to download the sequence:
Link to NCBI Protein BLAST