Transcript Information: S_Transcript_288995.p1


Annotated TAIR IDAT1G45474.1
Annotated Gene Namephotosystem I light harvesting complex gene 5
Annotated Gene Symbol(s)LHCA5
Annotation TypeHomolog
Chromosome Positionchr1:17179353-17180439 | Forward length=256
E-Value1E-33
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.4997746710832
Replicate 23.4181786638403
Replicate 30.34634246166386
Condition 2: 8 Hour
Replicate 10.80095362693457
Replicate 20
Replicate 30.40029760760528
Condition 3: 24 Hour
Replicate 10
Replicate 22.6600717812614
Replicate 30.71048012408778


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_288995.p1 GENE.S_Transcript_288995~~S_Transcript_288995.p1 ORF type:internal len:213 (+),score=-14.17,Chloroa_b-bind|PF00504.17|1.7e-36 S_Transcript_288995:3-638(+)
GACCAGACCGTCTGTATCGGGTACCGAGCTCTAGTTCGCGTGGTATACAGTCGGGCGTGCATCATGACAACCGTGAGGATGTTCAGCGCAGCGCCAACGCGCATGGCGAGCGCAAATGCAGGCGCATGCTCGCGCAGTGTGCGAGCACGTGCAGCTGACAGGCCAATGTGGTTTCCTGGCATGCCACCGCCGTCACACTTGAACGGCCAGATGGCCGGTGATTTTGGCTTCGACCCGCTTGGCCTCGGCAAGCAAGGCGACGAGCGCCTGAAGTGGTACGCGGCGGCGGAGAAGTACAACGCGCAGTGGGCGATGGCCGGCGTCGCGGGCATCCTCGGCCAGGAGCTGCTCGGCGTGACGCCAAAGTGGTTCAACGCGGGCGCGAAGGACTACCCCATCGACTTCCTGCCCCTCGTCGCCATCGAGTTTGTCCTCTTCGGCTTCCTCGAGCTCAAGCGCTACCAGGGCTGGAAGTCCACCGGCTCGAGCGGCGTCATCAACCAGTTCCCCTTTGATCCCGTGGGCATGAACAGCCCGAGCATGCAGCTCAAGGAGATCAAGAACGGCCGCCTCGCGATGGTGGCCTTCGTCGGCTTCGCCGTGCAGGCGCTGGTGACGCGGGAGGGCCCGATTGAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_288995.p1 GENE.S_Transcript_288995~~S_Transcript_288995.p1 ORF type:internal len:213 (+),score=-14.17,Chloroa_b-bind|PF00504.17|1.7e-36 S_Transcript_288995:3-638(+)
DQTVCIGYRALVRVVYSRACIMTTVRMFSAAPTRMASANAGACSRSVRARAADRPMWFPGMPPPSHLNGQMAGDFGFDPLGLGKQGDERLKWYAAAEKYNAQWAMAGVAGILGQELLGVTPKWFNAGAKDYPIDFLPLVAIEFVLFGFLELKRYQGWKSTGSSGVINQFPFDPVGMNSPSMQLKEIKNGRLAMVAFVGFAVQALVTREGPIE

Click here to download the sequence:
Link to NCBI Protein BLAST