Transcript Information: S_Transcript_289000.p1


Annotated TAIR IDAT3G54890.1
Annotated Gene Namephotosystem I light harvesting complex gene 1
Annotated Gene Symbol(s)LHCA1
Annotation TypeHomolog
Chromosome Positionchr3:20339706-20340922 | Reverse length=241
E-Value2E-50
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.249436677708
Replicate 21.5537175744729
Replicate 30.34634246166386
Condition 2: 8 Hour
Replicate 10.30035761010047
Replicate 20
Replicate 30.40029760760528
Condition 3: 24 Hour
Replicate 10
Replicate 22.553668910011
Replicate 30.35524006204389


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_289000.p1 GENE.S_Transcript_289000~~S_Transcript_289000.p1 ORF type:internal len:213 (+),score=-5.19,Chloroa_b-bind|PF00504.17|2.5e-49 S_Transcript_289000:3-638(+)
ACGCGAATACAGCTTGACATCCGGTCCGTAGCCAGAATTGTCAAGATGTCTGTTGCATTTGGTGCTCCCTGCCGCCTTGCCGCACGACCTGTGCTAGCACGCTCAGGTGTCGCAGCTCGAGCTAAAGCGGGCAACTGGCTGCCTGGCGCAGACTCGCCGAAGCATCTCGACGGCTCGCTGCCCGGCGACTATGGCTTTGACCCGCTCGGCCTGGGTGAGCAGAAGCTGGACCGCTTGCGCGAGAGTGAACTCATCCATGGGCGGTGGGCGATGCTTGGCGTTGTCGGCGCGCTCGTGCCGGAGCTCCTCGGCTTTGGCGACTGGTTTGACGCGCCCCTGTGGGCTGTCAACGGTGGCACGCCGACCTACTTTGGCGTCCCCGTGCCCGTGGACGTGAAGACCATCATCCTGGTGGAGATCGTTGCCATGGCGGGCGTCGAGCTGCTGCGCGCGCAAGAGAGCGAGCCGCTGAAGCGTGCCTACCCAGGCGGCGCCTTTGACCCCATGGGCTTCGGCAAGGATGGCAGTAAGCTCGAGAACATGAAGCTGAAGGAGATCAAGAACGGCCGCCTCGCGATGGTGGCCTTCGTCGGCTTCGCCGTGCAGGCGCTGGTGACGCGGGAGGGCCCGATTGAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_289000.p1 GENE.S_Transcript_289000~~S_Transcript_289000.p1 ORF type:internal len:213 (+),score=-5.19,Chloroa_b-bind|PF00504.17|2.5e-49 S_Transcript_289000:3-638(+)
TRIQLDIRSVARIVKMSVAFGAPCRLAARPVLARSGVAARAKAGNWLPGADSPKHLDGSLPGDYGFDPLGLGEQKLDRLRESELIHGRWAMLGVVGALVPELLGFGDWFDAPLWAVNGGTPTYFGVPVPVDVKTIILVEIVAMAGVELLRAQESEPLKRAYPGGAFDPMGFGKDGSKLENMKLKEIKNGRLAMVAFVGFAVQALVTREGPIE

Click here to download the sequence:
Link to NCBI Protein BLAST