Transcript Information: S_Transcript_29014.p1


Annotated TAIR IDAT5G47010.1
Annotated Gene NameRNA helicase, putative
Annotated Gene Symbol(s)UPF1, LBA1, ATUPF1
Annotation TypeOrtholog
Chromosome Positionchr5:19072009-19078856 | Forward length=1254
E-Value3.2E-147
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 123.199088540288
Replicate 226.372430666417
Replicate 324.303547258856
Condition 2: 8 Hour
Replicate 122.320160710935
Replicate 225.111258677244
Replicate 323.615224751874
Condition 3: 24 Hour
Replicate 125.793521322713
Replicate 223.522789857667
Replicate 324.045505890592


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_29014.p1 GENE.S_Transcript_29014~~S_Transcript_29014.p1 ORF type:5prime_partial len:343 (+),score=78.91 S_Transcript_29014:1-1029(+)
CGCAGACTTTTCTATGGTGCTGCAGCCGGTGTTGTGCCCAATGATAACTTTGCGTCAGTTTCAACGAGTGGTTCAAATGCTGATAGAAGAGGCGGTCGTGCTAGAGGTTATATGCCTTCTGGTCCGCCCAATGGTACTCACAAGCCAGGAGTCCATCCTGCTGGATTTCCTATGCCTCGAGTTCCTCTAGCTCCTTATCATGGTGCTCCACAATCTCAGCCATATGCAATTCCCTCCAGAGGAGCTGTACATGGTCCTATTGGAGCTGTTCCTCAAGTACCTCAGCCTGGGAGCCGTGGTTTTGGTGCAGGTCGTGGCAGTGCTGCTCCTATTGGCAGTCACCTGCCACACCATCAGGGTTCACAGCAACCTGTTGGAAACCTTGGGCCTAGTTTCAATTTTCCTCTGGAAAATCCAAATAGTCAACCTTCTGTTGGGGGTCCATTGTCCCAACCTGGATTCGTTTCTAATCATATGCCTGTTCAAGGGCCTAACCAATCTTTCCGTGATGGGTTTTCTATGGGGGGCATGTCGCAGGACTTCTTGGGCGATGATTTCAAGAGTCAGGGTTCTCATGTGCCTTACAACATTGCGGAGTTCTCCACTCAGGCTTCACAGAGTGGGTATTCAGTTGACTACGCCACACAAGGAGGGCAATCTGGTTTTCCCGGGAGCTTCTTGAACCAGAACTCTCAAGCTGGATATTCTCGTTTTGGGAGTGGGAATGATTTCATGTCACAGGACTATATGGCTCATGGATCACAAGGACTTTTCACTCAAGTTGGCTTCAATGACCCATCACAGGAAGACTCTTCGCAGGGCCATTTTGGGGTGGCAAATGCGAACCATATTCAATCACAGGGTTTGATGAATCCTCTGTACTCCCAGCCCTTCACACACTACAACACACAGCCATTGAATTTGCAGAATACTCAACAACAGCAGCCCCAGCCTCAGCAACAGCTACAGCAGCAGCCTGCACCGCAGGGCCAGAGCTCGCAGAATCAGAAAGTCCACTACAGTGGTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_29014.p1 GENE.S_Transcript_29014~~S_Transcript_29014.p1 ORF type:5prime_partial len:343 (+),score=78.91 S_Transcript_29014:1-1029(+)
RRLFYGAAAGVVPNDNFASVSTSGSNADRRGGRARGYMPSGPPNGTHKPGVHPAGFPMPRVPLAPYHGAPQSQPYAIPSRGAVHGPIGAVPQVPQPGSRGFGAGRGSAAPIGSHLPHHQGSQQPVGNLGPSFNFPLENPNSQPSVGGPLSQPGFVSNHMPVQGPNQSFRDGFSMGGMSQDFLGDDFKSQGSHVPYNIAEFSTQASQSGYSVDYATQGGQSGFPGSFLNQNSQAGYSRFGSGNDFMSQDYMAHGSQGLFTQVGFNDPSQEDSSQGHFGVANANHIQSQGLMNPLYSQPFTHYNTQPLNLQNTQQQQPQPQQQLQQQPAPQGQSSQNQKVHYSG*

Click here to download the sequence:
Link to NCBI Protein BLAST