Transcript Information: S_Transcript_2908.p1


Annotated TAIR IDAT5G54910.1
Annotated Gene NameDEA(D/H)-box RNA helicase family protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:22298668-22301719 | Reverse length=739
E-Value7.5E-285
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 115.309629742819
Replicate 215.420229260629
Replicate 315.666410221553
Condition 2: 8 Hour
Replicate 119.806242888628
Replicate 220.928503566196
Replicate 319.195722977604
Condition 3: 24 Hour
Replicate 114.005389012115
Replicate 213.433791539206
Replicate 313.492437732844


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_2908.p1 GENE.S_Transcript_2908~~S_Transcript_2908.p1 ORF type:complete len:744 (+),score=179.55,DEAD|PF00270.25|3.8e-42,DEAD|PF00270.25|1.2e+03,Helicase_C|PF00271.27|5.9e+03,Helicase_C|PF00271.27|6.9e-22,DUF4217|PF13959.2|1.7e-13,ResIII|PF04851.11|2.6e-05,ResIII|PF04851.11|3.1e+03 S_Transcript_2908:359-2590(+)
ATGAGAAAACCCAAGTCATACCGGCGTAACCTGAGGAAGCAAAAGCTCCAACAAGAAGCCCAAGAAATCGAGCTCCTTAACAAATGGATTGAATTTGGAAAACCCGAAAGGAGTTCAATCCCACTATCACTTCCCCCACTTCCAAAGGAGTCTCCAGTGGGTCAACTTGATGATAATACCTTCTCAAGGTATGTTGGGGTTGAGTATTTCAAGCAAATGCCTTTATCAAAATACACCAAAGATGGGTTGAGAGCTTCTAAGTATGTTAAGATGACTGACATTCAAAGAGCTTCTTTGCCTCATTCTCTTTGTGGCCGTGATATTCTTGGTGCTGCTCAAACTGGTTCTGGAAAGTCTCTTGCTTTTATTATACCTGTCTTAGAGAAGTTATATAAAGAGAGATGGGGTCCAGAGCTTGGAGTGGGTTGCATCATCATATCTCCAACAAGGGAGTTAGCCAGTCAACTTTTTGGTGTTCTGAACTCAGTTGGAAAGTACCATGGCTTTAGTATTGGTCTCCTAATTGGTGGCCGCGATGGTGTAGACACTGAGAAAGAACTTGTGACTAAAATGAATATTTTGGTCTGTACTCCTGGAAGACTGCTCCAGCACATGGATGAGACACCGAACTTTGACTGCTTTCAGATTCAGATATTAGTTCTTGATGAAGCAGATCGAATTCTTGATGCTGGGTTCAAGAAGGAAATGAAAGCAATCTTATTACAGATTAAGAAGAAGCAAACCTTACTGTTTTCAGCAACACAAACAAAATCAGTTAAGGATCTGGGCAAACTTAGTTTGAAGGACCCTGTATATGTGAGTGTTCATGAAGAGGCCACGACAGCCACTCCCAAGGGCTTACTGCAAACAGAAACTATTGTCCCTTTACACCAGAAGTTAGACCTTTTGTGGAGTTTCATAAAGTCACATCTGAATTCCAGGATTCTAGTGTTCCTTACCACCCGCAAGCAGGTGAAGTTTGTTTTTGAGGCCTTCAAAAAATTGCATCCAGGTATCCCCTTGAAATGTTTACATGGAAAGATGAATCAGGAAGCAAGGTTGGGAACATATTCTGATTTCTGCACAAAACGTAGTGTTCTATTCTCGACTGATGTTTCCTCAAGAGGTCTTGATTTCGAGAAAGCAGTGGACTGGGTTGTTCAAGTGGATTGTCCACAAGATGTTGCAACTTACATCCACAGAGTTGGTCGCACTGCTCGATACAATACTGGTGGCAAAGCTGTTTTATTTTTAGAGCCATTAGAGATGAAAATGCTTGAAAAATTAAAAGAGGCGAAAATCCCAATTATGTCAAAGATGGTGAACAAAGAAAGATTGAAACCTGTCTCTCCTTTGCTAGCATCTTTGTTAGTCAAATATCCTGCTATGCAACAATTGGCTCAGAAGGCCTTTGTTACATACCTCAAGGCTATTCATAAAGAGAAGGACAAGGATGTTTTTGATGTGATGAAACTTCCCCTGGATGATTTCTCAGCCTCGCTGGGTTTACCCATGACACCTATAATTCGTTCCATAAATCGCAAGAGTACAGACAAAAATTATTCAAAAGTAGATACAGCTCTTGAGGTAGATGATTCTGCAGCAGAAAATGTGCTGGAGAACCAAACAACTGTCGGTGATGAATCAGATGAAGATCAATCCGACAATGATCTTCTAGGAAAAGCGAGTTCACCTAGTGCAAAGCCAGCAGTAGCTGAAATTGAGGCTGTGATGCCGGCTACCCGAGTTTTGAAGAAAAAGAAGCTAAAAATCAACATTCATAGACCTGTGGGGACAAGGGTCGTCTTTGATGAAGAGGGCAATGTTCGACCACCCCTTGCAACTATAGCAGATGTAGATGATGATAACTGTTCTTCTGGAGTAAATGTAGATAAAGTGAAAGAGCGTTATCAGAAAGTAAGGGAAATGATAAAGCAGGAGGATACAGTGGACAAGCTCCACGCTCGTCAACTCCACAAGGAGAAAAGAATGAAAGAGAAGGTGAAGTTGAAGAGGGGGAGGCCAGACGACGATGATGAAGAAGAGGATGTCTCTGAGTCAGATGGAGAAGCTGCCGCAGGCAAACCCAACAAGAAGTCAAAAGTGTACTTTGACAGTGACAGTGATGTCGAACGTGAATACAAGGAAAAAGTGGACATCAATACAAAAAATATTTCTCTGGCTGAGCAAGAAGCTTTGGCTCTCAAGTTGCTCAGCTCGATGCACTCTTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_2908.p1 GENE.S_Transcript_2908~~S_Transcript_2908.p1 ORF type:complete len:744 (+),score=179.55,DEAD|PF00270.25|3.8e-42,DEAD|PF00270.25|1.2e+03,Helicase_C|PF00271.27|5.9e+03,Helicase_C|PF00271.27|6.9e-22,DUF4217|PF13959.2|1.7e-13,ResIII|PF04851.11|2.6e-05,ResIII|PF04851.11|3.1e+03 S_Transcript_2908:359-2590(+)
MRKPKSYRRNLRKQKLQQEAQEIELLNKWIEFGKPERSSIPLSLPPLPKESPVGQLDDNTFSRYVGVEYFKQMPLSKYTKDGLRASKYVKMTDIQRASLPHSLCGRDILGAAQTGSGKSLAFIIPVLEKLYKERWGPELGVGCIIISPTRELASQLFGVLNSVGKYHGFSIGLLIGGRDGVDTEKELVTKMNILVCTPGRLLQHMDETPNFDCFQIQILVLDEADRILDAGFKKEMKAILLQIKKKQTLLFSATQTKSVKDLGKLSLKDPVYVSVHEEATTATPKGLLQTETIVPLHQKLDLLWSFIKSHLNSRILVFLTTRKQVKFVFEAFKKLHPGIPLKCLHGKMNQEARLGTYSDFCTKRSVLFSTDVSSRGLDFEKAVDWVVQVDCPQDVATYIHRVGRTARYNTGGKAVLFLEPLEMKMLEKLKEAKIPIMSKMVNKERLKPVSPLLASLLVKYPAMQQLAQKAFVTYLKAIHKEKDKDVFDVMKLPLDDFSASLGLPMTPIIRSINRKSTDKNYSKVDTALEVDDSAAENVLENQTTVGDESDEDQSDNDLLGKASSPSAKPAVAEIEAVMPATRVLKKKKLKINIHRPVGTRVVFDEEGNVRPPLATIADVDDDNCSSGVNVDKVKERYQKVREMIKQEDTVDKLHARQLHKEKRMKEKVKLKRGRPDDDDEEEDVSESDGEAAAGKPNKKSKVYFDSDSDVEREYKEKVDINTKNISLAEQEALALKLLSSMHS*

Click here to download the sequence:
Link to NCBI Protein BLAST