Transcript Information: S_Transcript_290913.p1


Annotated TAIR IDAT1G52640.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:19608857-19610428 | Reverse length=523
E-Value3.8E-217
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.79293858428843
Replicate 20.28759688436239
Replicate 30.3434401505326
Condition 2: 8 Hour
Replicate 11.3899230188075
Replicate 20.99985915708275
Replicate 31.4289953701664
Condition 3: 24 Hour
Replicate 10.40679485084905
Replicate 20.25322694498712
Replicate 30.42271582801871


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_290913.p1 GENE.S_Transcript_290913~~S_Transcript_290913.p1 ORF type:5prime_partial len:537 (+),score=87.94,PPR_2|PF13041.2|2.2,PPR_2|PF13041.2|0.081,PPR_2|PF13041.2|0.45,PPR_2|PF13041.2|1.2e-09,PPR_2|PF13041.2|8.6e-15,PPR_2|PF13041.2|5.1e-10,PPR_2|PF13041.2|9.7e-14,PPR_2|PF13041.2|1.6e-09,PPR_2|PF13041.2|1.3e-10,PPR_2|PF13041.2|3.2e-05,PPR_1|PF12854.3|0.79,PPR_1|PF12854.3|0.19,PPR_1|PF12854.3|0.00034,PPR_1|PF12854.3|0.00015,PPR_1|PF12854.3|1.2e-06,PPR_1|PF12854.3|1.9e-08,PPR_1|PF12854.3|0.0084,PPR_1|PF12854.3|0.38,PPR_1|PF12854.3|0.0095,PPR_3|PF13812.2|15,PPR_3|PF13812.2|0.099,PPR_3|PF13812.2|7.3e-05,PPR_3|PF13812.2|2e+02,PPR_3|PF13812.2|0.00051,PPR_3|PF13812.2|2e-05,PPR_3|PF13812.2|0.00078,PPR_3|PF13812.2|0.009,PPR_3|PF13812.2|0.013,PPR|PF01535.16|68,PPR|PF01535.16|0.1,PPR|PF01535.16|6.7e+02,PPR|PF01535.16|0.00011,PPR|PF01535.16|0.00017,PPR|PF01535.16|0.00069,PPR|PF01535.16|4.7e-06,PPR|PF01535.16|0.92,PPR|PF01535.16|0.021,PPR|PF01535.16|0.03 S_Transcript_290913:2-1612(+)
GCCATTGTAACAGTGTACGCCCGAAACAGAGCAACCACCACAGCGTCCCTCTTTCGCTTCCTTTCTCATTCCTTCTCCCACTCTCACCGTTCTCTCTCCTTCTCATCAAACTCACCGTCATCTTCATCACCATCACCTGACGATGTCAACGACATCTCTCGAGTTATTAGCGACTTCCGTTTACCCCAACACGACATTGAGCTTGCACTCGCCCCATTCTCTTCCAAAATCACCACAAATTTGGTTGACCAAGTTCTCAAACGAACCAAAAATCTGGGCTTTTCGGCCCACAGATTCTTCTTATGGGCTAAAACATTGGATGGGTTTCAACCCAATGTCAATAGCTACAAGATTCTTATTGATGTTTTGGGTAGTGCCAAACAATTCCCTTTGATATGGGATTTACTTGCTGAGGTCAAAGAAAGTCAGGAATTTGAGCTTTGCCCAGAATTTTTCTGGGTAATTTTTGATGCTTATTGTAGAGCAAACTTACCTAATGATGCAATTAGAGCTTTAAATAGAATGGCTGATTATGGGTTAAGTCCAACCTTGAATGACCTTGATCATTTGTTGTATTTGTTGTGTCGGAGGAAGTTTGTGAGACATGGGCAAGAGTTTTTTGATAAAGTGAAGGGCCAATTTGCCCCTAGTGTGAAAAGTTACAGTATTTTGATAAGGGGGTGGGGTGATATTGGTGAACCTGACGTTGCACGCAAGGTGTTCGATGAAATGTCTCAGAGAGGGTGTGTAGTCGATGTTCCTGCTTATAATGCTTTGTTGGAAGCCTTATGTAATGGCTGGTGTTTGGATGAGGCTTATGCAATGTTTAGAGATATGGGTTCTAAGGGTTTACATCCTGATGCTTTCACTTATTCGATATTTATTCGATCATATTGTCAAAGAGATAATATTCATTCCATCTTTAGGGTGCTTGATAGAATGAAGAGGTACAATCTGGTGCCTAATGTGTATACTTACAACTGTGTAATTAAGAAGTTGTGTGCAAGTGACAAGGTTGAAGAGGCTTACTTGCTTCTTGATGAGATGATAAAAGCAGGGGTTAGTCCAGATACTTGGAGTTACAATGCCATTATGGGTTACCATTGTGATCGTTGTGAGGTTAATAGGGCTCTCGGATTGCTGTCTATGATGGAGAAGGAACAATGTAAGCCTGACAGGCATGCATATAATATGTTGCTGAAAATGTTAATTAGGATAGGTAGGTTTGATAGGGTTGATGAGGTATGGGATCGTATGCCATTAAGGGGCTTCTATCCTTCGGTTTCAACATATGCCGTTATGATCCATGGCTTTCTTAAGAAGAAAGGTAAACTAGAGGAGGCATGTAAGTACTTTGAGATAATGATTGATGAAGGGATCCCACCTTATTCTTCAACTATTCAGGTCTTGAGGAATAGACTTGTGGGGCTGGGATTTATGGAGCAGATAGACATACTGGCTACTAAGATGGAGGCTAGTAGTTCTTCTGCAATTAAAGAACTGTCAAAAGCAATGCGAGGTCGTAGGTCTAATCGGAGGAGGAGCAAAGAAGAAAGCTCAGAACTTAGTGAAGAAGAAGATGAATGGCCGTTCAAGCCTGATACAACATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_290913.p1 GENE.S_Transcript_290913~~S_Transcript_290913.p1 ORF type:5prime_partial len:537 (+),score=87.94,PPR_2|PF13041.2|2.2,PPR_2|PF13041.2|0.081,PPR_2|PF13041.2|0.45,PPR_2|PF13041.2|1.2e-09,PPR_2|PF13041.2|8.6e-15,PPR_2|PF13041.2|5.1e-10,PPR_2|PF13041.2|9.7e-14,PPR_2|PF13041.2|1.6e-09,PPR_2|PF13041.2|1.3e-10,PPR_2|PF13041.2|3.2e-05,PPR_1|PF12854.3|0.79,PPR_1|PF12854.3|0.19,PPR_1|PF12854.3|0.00034,PPR_1|PF12854.3|0.00015,PPR_1|PF12854.3|1.2e-06,PPR_1|PF12854.3|1.9e-08,PPR_1|PF12854.3|0.0084,PPR_1|PF12854.3|0.38,PPR_1|PF12854.3|0.0095,PPR_3|PF13812.2|15,PPR_3|PF13812.2|0.099,PPR_3|PF13812.2|7.3e-05,PPR_3|PF13812.2|2e+02,PPR_3|PF13812.2|0.00051,PPR_3|PF13812.2|2e-05,PPR_3|PF13812.2|0.00078,PPR_3|PF13812.2|0.009,PPR_3|PF13812.2|0.013,PPR|PF01535.16|68,PPR|PF01535.16|0.1,PPR|PF01535.16|6.7e+02,PPR|PF01535.16|0.00011,PPR|PF01535.16|0.00017,PPR|PF01535.16|0.00069,PPR|PF01535.16|4.7e-06,PPR|PF01535.16|0.92,PPR|PF01535.16|0.021,PPR|PF01535.16|0.03 S_Transcript_290913:2-1612(+)
AIVTVYARNRATTTASLFRFLSHSFSHSHRSLSFSSNSPSSSSPSPDDVNDISRVISDFRLPQHDIELALAPFSSKITTNLVDQVLKRTKNLGFSAHRFFLWAKTLDGFQPNVNSYKILIDVLGSAKQFPLIWDLLAEVKESQEFELCPEFFWVIFDAYCRANLPNDAIRALNRMADYGLSPTLNDLDHLLYLLCRRKFVRHGQEFFDKVKGQFAPSVKSYSILIRGWGDIGEPDVARKVFDEMSQRGCVVDVPAYNALLEALCNGWCLDEAYAMFRDMGSKGLHPDAFTYSIFIRSYCQRDNIHSIFRVLDRMKRYNLVPNVYTYNCVIKKLCASDKVEEAYLLLDEMIKAGVSPDTWSYNAIMGYHCDRCEVNRALGLLSMMEKEQCKPDRHAYNMLLKMLIRIGRFDRVDEVWDRMPLRGFYPSVSTYAVMIHGFLKKKGKLEEACKYFEIMIDEGIPPYSSTIQVLRNRLVGLGFMEQIDILATKMEASSSSAIKELSKAMRGRRSNRRRSKEESSELSEEEDEWPFKPDTT*

Click here to download the sequence:
Link to NCBI Protein BLAST