Transcript Information: S_Transcript_29158.p1


Annotated TAIR IDAT5G48730.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:19763152-19765136 | Forward length=508
E-Value2.7E-241
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 110.738579445775
Replicate 212.429134857937
Replicate 312.762517172862
Condition 2: 8 Hour
Replicate 115.006756149094
Replicate 215.699542905071
Replicate 314.293667789695
Condition 3: 24 Hour
Replicate 116.138812559328
Replicate 212.811901280976
Replicate 313.422257548921


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_29158.p1 GENE.S_Transcript_29158~~S_Transcript_29158.p1 ORF type:complete len:513 (+),score=74.40,PPR_2|PF13041.2|32,PPR_2|PF13041.2|6.3e-05,PPR_2|PF13041.2|1.5e-11,PPR_2|PF13041.2|9.1e-07,PPR_2|PF13041.2|6.7e-11,PPR_2|PF13041.2|1.2e-08,PPR_2|PF13041.2|6.2e-09,PPR_2|PF13041.2|5.5e-12,PPR_2|PF13041.2|1e-10,PPR_2|PF13041.2|0.0022,PPR_3|PF13812.2|51,PPR_3|PF13812.2|3.3,PPR_3|PF13812.2|8.7e-06,PPR_3|PF13812.2|0.00091,PPR_3|PF13812.2|3.1e-05,PPR_3|PF13812.2|1.3,PPR_3|PF13812.2|0.0031,PPR_3|PF13812.2|1.1e-05,PPR_3|PF13812.2|1.7e+02,PPR_3|PF13812.2|0.0015,PPR_3|PF13812.2|0.0071,PPR|PF01535.16|21,PPR|PF01535.16|0.07,PPR|PF01535.16|0.0033,PPR|PF01535.16|0.048,PPR|PF01535.16|1.3e-06,PPR|PF01535.16|0.32,PPR|PF01535.16|0.00072,PPR|PF01535.16|5.7e-06,PPR|PF01535.16|0.28,PPR|PF01535.16|0.0027,PPR|PF01535.16|5.4e-05,PPR_1|PF12854.3|7.3e+02,PPR_1|PF12854.3|8.1e+02,PPR_1|PF12854.3|0.028,PPR_1|PF12854.3|0.0059,PPR_1|PF12854.3|2.7e-08,PPR_1|PF12854.3|2.4e+02,PPR_1|PF12854.3|0.00046,PPR_1|PF12854.3|0.001,PPR_1|PF12854.3|0.021,PPR_1|PF12854.3|0.32,PPR_1|PF12854.3|3.8e-07,MRP-S27|PF10037.5|0.0076,MRP-S27|PF10037.5|0.1,MRP-S27|PF10037.5|7.4 S_Transcript_29158:131-1669(+)
ATGACCATGACTTCTTCGCTCCCAGGACCCACCTTCCCCTTCCCACCAGCACCACTCAACCACCATCGCCACTTAGCTTCACAGCCACCTCTCCGGACCAAACCACCCACTTCTTCACCCGACCCGTACCCGGACTCAGACCCAGACCGGGGCCCAACAACATCCATTGCAGTAAGAGGGACCGAAACCCAGAAGAAGAAACTGGCTGTGTTGAATGATCGTAGTAGTGATAAAGATAGAAAAGAAGAGGTAAACAGGAAAATAGCTTCACAGAAGGCCATTTCTGTCATTTTAAGAAGAGAGGCTACAAAGGCTGTGCTTGAGAAGAAGAAAGGGATTAGCTCTAAGAGACTTTTGCCCAGAACTGTCCTTGAATCCTTACATGAACGCATCACTGCTCTCCGTTGGGAGTCTGCTCTCAAGGTTTTTGAACTAATGCGCGAGCAGTTGTGGTATAGGCCCAACGCCAGTATATACATTAAGCTTATTGTGATGCTTGGAAAATGTAAACAACCCAAAAGGGCTCATGAACTATTTCAAGCTATGGTTGATGAAGGCTGTATTGTAGACCATGAAGCATACACCGCTTTATTATCGGCCTACAGCAGAAGTTGTCACTTTGATCAAGCATTCGCTTTGCTTGAGCATATGAAAAGCACGCCTGATTGCAGACCTGATGTTTTCACATACTCAATCCTCATAAAGTCATGCCTGCAAGTCCTTGACTTTGATAAAGTCCGTATGCTGCTGGCTGACATGGCCTCTCAGGGAATCAGGCCCAACACAGTCACATATAATACCCTCATTGATGCGTATGGGAAAGCAGGAAAGTTTGCAGAGATGGAGTCCACACTAGCAGAAATGCTCTGTAATCAGTATTGTGAACCCGATGTATGGACCATGAATTCCACTCTTCGAGCTTTTGGAAGCAATGGTCAAATTGAAATGATGGAGAAGTGTTACGAAAAATTTCAGGGTGCAGGAATTGAACCCAACATCAGAACCTTCAACATACTCCTCGATTCATATGGCAAAACTGGTAATTATGAAAAGATGAGTGCAGTGATGGAATACATGCAGAAATATCACTACTCGTGGACAATCGTGACCTATAATGTAGTGATAGATGCCTTTGGCAGAGCTGGAGATTTGAAGCAGATGGAGTACTTATTTAGGTTAATGCAATCAGAAAGGATAAAACCAGATTCTGTCACATTCTGCTCGCTTGTAAGGGCTTATGGACGAGCTGGGAAAGCGGAGAAAATTGGAAGCGTTTTACGAATCATCAATAACACAGATGTGATGTTGGATACTGTGTTCTTCAACTGTCTGGTGGACGCATATGGGAGGATGCAACGGTTTGCAGAAATGAAAGAGGTTCTTGAGATGATGAATAGTAAAGGATGCAGGCCTGATAGTGTTACTTATAGAACAATGATGAAAGCTTATTCGAGTGCTGGAATGGTAAACCAGGCGAAAGAGTTGCGAGATCTTATGAAATCCTCGAAGGCATCTCTGTCTACGATGGAAGAAGCATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_29158.p1 GENE.S_Transcript_29158~~S_Transcript_29158.p1 ORF type:complete len:513 (+),score=74.40,PPR_2|PF13041.2|32,PPR_2|PF13041.2|6.3e-05,PPR_2|PF13041.2|1.5e-11,PPR_2|PF13041.2|9.1e-07,PPR_2|PF13041.2|6.7e-11,PPR_2|PF13041.2|1.2e-08,PPR_2|PF13041.2|6.2e-09,PPR_2|PF13041.2|5.5e-12,PPR_2|PF13041.2|1e-10,PPR_2|PF13041.2|0.0022,PPR_3|PF13812.2|51,PPR_3|PF13812.2|3.3,PPR_3|PF13812.2|8.7e-06,PPR_3|PF13812.2|0.00091,PPR_3|PF13812.2|3.1e-05,PPR_3|PF13812.2|1.3,PPR_3|PF13812.2|0.0031,PPR_3|PF13812.2|1.1e-05,PPR_3|PF13812.2|1.7e+02,PPR_3|PF13812.2|0.0015,PPR_3|PF13812.2|0.0071,PPR|PF01535.16|21,PPR|PF01535.16|0.07,PPR|PF01535.16|0.0033,PPR|PF01535.16|0.048,PPR|PF01535.16|1.3e-06,PPR|PF01535.16|0.32,PPR|PF01535.16|0.00072,PPR|PF01535.16|5.7e-06,PPR|PF01535.16|0.28,PPR|PF01535.16|0.0027,PPR|PF01535.16|5.4e-05,PPR_1|PF12854.3|7.3e+02,PPR_1|PF12854.3|8.1e+02,PPR_1|PF12854.3|0.028,PPR_1|PF12854.3|0.0059,PPR_1|PF12854.3|2.7e-08,PPR_1|PF12854.3|2.4e+02,PPR_1|PF12854.3|0.00046,PPR_1|PF12854.3|0.001,PPR_1|PF12854.3|0.021,PPR_1|PF12854.3|0.32,PPR_1|PF12854.3|3.8e-07,MRP-S27|PF10037.5|0.0076,MRP-S27|PF10037.5|0.1,MRP-S27|PF10037.5|7.4 S_Transcript_29158:131-1669(+)
MTMTSSLPGPTFPFPPAPLNHHRHLASQPPLRTKPPTSSPDPYPDSDPDRGPTTSIAVRGTETQKKKLAVLNDRSSDKDRKEEVNRKIASQKAISVILRREATKAVLEKKKGISSKRLLPRTVLESLHERITALRWESALKVFELMREQLWYRPNASIYIKLIVMLGKCKQPKRAHELFQAMVDEGCIVDHEAYTALLSAYSRSCHFDQAFALLEHMKSTPDCRPDVFTYSILIKSCLQVLDFDKVRMLLADMASQGIRPNTVTYNTLIDAYGKAGKFAEMESTLAEMLCNQYCEPDVWTMNSTLRAFGSNGQIEMMEKCYEKFQGAGIEPNIRTFNILLDSYGKTGNYEKMSAVMEYMQKYHYSWTIVTYNVVIDAFGRAGDLKQMEYLFRLMQSERIKPDSVTFCSLVRAYGRAGKAEKIGSVLRIINNTDVMLDTVFFNCLVDAYGRMQRFAEMKEVLEMMNSKGCRPDSVTYRTMMKAYSSAGMVNQAKELRDLMKSSKASLSTMEEA*

Click here to download the sequence:
Link to NCBI Protein BLAST