Transcript Information: S_Transcript_293305.p1


Annotated TAIR IDAT5G28780.1
Annotated Gene NamePIF1 helicase
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:10812907-10814173 | Reverse length=337
E-Value1.1E-70
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20.17046305397638
Replicate 30
Condition 2: 8 Hour
Replicate 10
Replicate 20
Replicate 30
Condition 3: 24 Hour
Replicate 10.48222700862239
Replicate 20
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_293305.p1 GENE.S_Transcript_293305~~S_Transcript_293305.p1 ORF type:complete len:906 (+),score=137.28,PIF1|PF05970.10|4.4e-134 S_Transcript_293305:2084-4801(+)
ATGATACATGGTCCATGTGGAAATGACAATAAGGGTGCTCCTTGCATGTTAGGGGACACATGTACGAAAAAATTCCCAAAAAGCTTTCAGCAAGAAACAACAATAGATGAGAATGGTTATGCTGTCTATAAGAGAAGAGATAATGGCAGGATTGTTCAAAAGGGAAACATTATACTGGACAACAGATTTGTTGTTCCTTACAACAGAGAGTTGCTTCTGATGTTTGAAGCTCATATTAATGTGGAATGGTGCAATAAATCAAGAGTTATTAAGTATCTCTTCAAATACCTAACCAAGGGGCCAGATAGAACCACAATACTCATAAGGAAAAAATCCAAATCCGGTGAAAATGGTGCACCAGCAGGTGATGATGAGATACAAAATTACTTGGATTGTAGATACTTATCTGCTTGCGAAGCAATTTGGAGGATATTCCAGTTTGTCATACATCATCGAACCCCTGCTGTTATTCGTCTCCATGTACATTTAGAACATGAACAAAGCCTAACATTAAGAGATGACCAAAGTTTAGCTGATGTCGTAGGGAGAGAAGAGGGAAGGAAAACCATGTTCACGCAATGGATGAAGACCAATAAGATTTATGAGGAAGCAAGAAAGCTCACATATGCTGAGTTCCCCTCAAAATTTGTTTGGAATGAGGCAGAAAAGATATGGGACAACGAGAGCCAGAAGTGGAAGACCACAAAAACATGGACTCCTCGAAAACAAGGCATCTGCTTAGGAAGAATAGCCTATGTGCACCCAACAGCAGGCGAAAGGTACTACCTAAGGTTGTTGTTGAATTCGGCAAGGGGCCCAACCAGTTACAAAGACATAAAAACAGTGAATGGGGTAACATATCCCACCTTCAAAGAAGCTTGCTATGTTCTTGGTCTGTTGAATGATGACAAAGAATGGATTGATGCAATTCAAGAAGCAGATATTTGGGCATCTCCAAATCAGTTAAGAGAGCTATTTGTTACTATCTTACTATTTTGTGAGGTAAGTGACCCCCGACAATTTTGGGAGACGAGTGTTGGAATGCTATGTGAAGATATTCTACACAAAAGGAGAAAGACTCTAGCTGATTTCAGTTCTCTACCACAACCCAACTTCCAAGAAGTTGCTCATCTAGAGAACAAATTGATACGAGAGGAACTCACCTATGACGTTATTGCCCTAAAGCTCGAACACAAAAAATGCAAAGAATTGCTCAACTGCCAACAACTAGAGGTATATGATGCTGTAATTCATGTTGTTGAGAAGCAGGAAAGAGGTGTATTCTTTGTGTACGGACATGGTGGAACTGGCAAGACTTTTTTGTACTCCACGATAGCATCAAAACTTAGGAGTGAAAGGAAGATAGTACTCACCGTTGCATCATCTGGAATTGCATCTCTCCTACTCCCAGGTGGTCATACAGCCCATAGCAGGTTTGATATTCCTATTGAACTTTTTGATGGGGCAAATTGTGGGATTCGGCAGCAAACGCAGCTAGCGGAGCTTATAGTAAGATCCTCTCTTATTATATGGGATGAAGCGCCTATGGACCACAAATTTGCATTTGAGGCTGTTGATAGAACATTGAGAGATATTGTTGGGTTCAGAAACAAAGACGCTTCCATGAAACTCTTTGGCGGAAAAGTTGTCTTATTGGGTGGAGATTTCAGACAGGTGCTGCCTGTGATTCCCAAAGGCAAAAGACAAGATATTGTGCAAGCAACTCTCAATAGATCTTATATTTGGGAGGAGTGCAAAGTTTTCAGGCTATCACAGAGTATGAGAGTACAAAGCCAAATAGCAGAAGGCACACTTGATAAAAGGAAGGAAGATTTCAACACTTGGATCCTTGATATTGGAAATGGAATTGCTCGAGCAATCTCAAGGCATGACGAGGAAGAACCGACATGGATTCAAATTCCTGCAGAGTATTTGATTAAAAGTGAAGACAATCATGTTAAGGACATAGTGAAGAGTACACATCCTCATTTTCATACAAGGTGGTCTGATGAAGATTATCTAAGGGAAAGAGCAATATTGACTCCATTAAATGAAATTGCCAATGATATAAATGATTACATGTTCAACCTAATTGATGGAGAGTCCATGACATATAAAAGTTGTGATGAAATATGCCAAGGGTCAACAGACACTGATGAACAATATCTATCATATCCTACAGAATTCTTTAATACACTTACATTCTCAGGAATGCCAAACCATGTTCTAAAGCTTAAGGTAGGAATGCCAGTGATGTTATTGAGGAACATCAACCCCACTTTTGGATTGTGTAACGGGACAAGATTGATAGTTTCGAAATTGGGAAGATATATTGTGCAAGCAAAGATTATTACTGGGAGTAATATTGGAGCAAAGGTGGCAATTCCAAGAATAATAGTATCATCAAATGATGGAAAATTTCCATTTGTCTTGAAAAGGAGGCAATATCCTCTTCGAGTATGCTATGCAATGACAATCAACAAGAGTCAAGGACAATCACTCAAGATGGTTGGAGTATATCTCCCGAATCCAGTTTTCAGTCATGGACAACTCTATGTTGTTGCTTCAAGAGTTACTTCTCCAGAAGGATTGAAATTTCTCATAAAAGAAACTGATGAAAAATTCAAAGGCTGCACAAGAAACATTGTCTACAAGGAAGTGTTCAACAATATTCCCAAGGAACATAAAGTGCCAGAATGTCAACCAAGTGTCCAATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_293305.p1 GENE.S_Transcript_293305~~S_Transcript_293305.p1 ORF type:complete len:906 (+),score=137.28,PIF1|PF05970.10|4.4e-134 S_Transcript_293305:2084-4801(+)
MIHGPCGNDNKGAPCMLGDTCTKKFPKSFQQETTIDENGYAVYKRRDNGRIVQKGNIILDNRFVVPYNRELLLMFEAHINVEWCNKSRVIKYLFKYLTKGPDRTTILIRKKSKSGENGAPAGDDEIQNYLDCRYLSACEAIWRIFQFVIHHRTPAVIRLHVHLEHEQSLTLRDDQSLADVVGREEGRKTMFTQWMKTNKIYEEARKLTYAEFPSKFVWNEAEKIWDNESQKWKTTKTWTPRKQGICLGRIAYVHPTAGERYYLRLLLNSARGPTSYKDIKTVNGVTYPTFKEACYVLGLLNDDKEWIDAIQEADIWASPNQLRELFVTILLFCEVSDPRQFWETSVGMLCEDILHKRRKTLADFSSLPQPNFQEVAHLENKLIREELTYDVIALKLEHKKCKELLNCQQLEVYDAVIHVVEKQERGVFFVYGHGGTGKTFLYSTIASKLRSERKIVLTVASSGIASLLLPGGHTAHSRFDIPIELFDGANCGIRQQTQLAELIVRSSLIIWDEAPMDHKFAFEAVDRTLRDIVGFRNKDASMKLFGGKVVLLGGDFRQVLPVIPKGKRQDIVQATLNRSYIWEECKVFRLSQSMRVQSQIAEGTLDKRKEDFNTWILDIGNGIARAISRHDEEEPTWIQIPAEYLIKSEDNHVKDIVKSTHPHFHTRWSDEDYLRERAILTPLNEIANDINDYMFNLIDGESMTYKSCDEICQGSTDTDEQYLSYPTEFFNTLTFSGMPNHVLKLKVGMPVMLLRNINPTFGLCNGTRLIVSKLGRYIVQAKIITGSNIGAKVAIPRIIVSSNDGKFPFVLKRRQYPLRVCYAMTINKSQGQSLKMVGVYLPNPVFSHGQLYVVASRVTSPEGLKFLIKETDEKFKGCTRNIVYKEVFNNIPKEHKVPECQPSVQ*

Click here to download the sequence:
Link to NCBI Protein BLAST