Transcript Information: S_Transcript_293306.p1


Annotated TAIR IDAT5G28780.1
Annotated Gene NamePIF1 helicase
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:10812907-10814173 | Reverse length=337
E-Value2E-61
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.62485168321662
Replicate 20.40028540285779
Replicate 30.55111698008625
Condition 2: 8 Hour
Replicate 10.36414754010046
Replicate 20.4775207820646
Replicate 30.20474133238509
Condition 3: 24 Hour
Replicate 10.53621378899004
Replicate 20.55631554563073
Replicate 30.67294675573949


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_293306.p1 GENE.S_Transcript_293306~~S_Transcript_293306.p1 ORF type:complete len:937 (+),score=138.89,PIF1|PF05970.10|4.7e-134 S_Transcript_293306:2084-4894(+)
ATGATACATGGTCCATGTGGAAATGACAATAAGGGTGCTCCTTGCATGTTAGGGGACACATGTACGAAAAAATTCCCAAAAAGCTTTCAGCAAGAAACAACAATAGATGAGAATGGTTATGCTGTCTATAAGAGAAGAGATAATGGCAGGATTGTTCAAAAGGGAAACATTATACTGGACAACAGATTTGTTGTTCCTTACAACAGAGAGTTGCTTCTGATGTTTGAAGCTCATATTAATGTGGAATGGTGCAATAAATCAAGAGTTATTAAGTATCTCTTCAAATACCTAACCAAGGGGCCAGATAGAACCACAATACTCATAAGGAAAAAATCCAAATCCGGTGAAAATGGTGCACCAGCAGGTGATGATGAGATACAAAATTACTTGGATTGTAGATACTTATCTGCTTGCGAAGCAATTTGGAGGATATTCCAGTTTGTCATACATCATCGAACCCCTGCTGTTATTCGTCTCCATGTACATTTAGAACATGAACAAAGCCTAACATTAAGAGATGACCAAAGTTTAGCTGATGTCGTAGGGAGAGAAGAGGGAAGGAAAACCATGTTCACGCAATGGATGAAGACCAATAAGATTTATGAGGAAGCAAGAAAGCTCACATATGCTGAGTTCCCCTCAAAATTTGTTTGGAATGAGGCAGAAAAGATATGGGACAACGAGAGCCAGAAGTGGAAGACCACAAAAACATGGACTCCTCGAAAACAAGGCATCTGCTTAGGAAGAATAGCCTATGTGCACCCAACAGCAGGCGAAAGGTACTACCTAAGGTTGTTGTTGAATTCGGCAAGGGGCCCAACCAGTTACAAAGACATAAAAACAGTGAATGGGGTAACATATCCCACCTTCAAAGAAGCTTGCTATGTTCTTGGTCTGTTGAATGATGACAAAGAATGGATTGATGCAATTCAAGAAGCAGATATTTGGGCATCTCCAAATCAGTTAAGAGAGCTATTTGTTACTATCTTACTATTTTGTGAGGTAAGTGACCCCCGACAATTTTGGGAGACGAGTGTTGGAATGCTATGTGAAGATATTCTACACAAAAGGAGAAAGTTCTATAGGCATCCTCACTTGGTGTTGACAGATCAGCAAATTCAAACATATTGTTTGATTGAGATTGATAATATATTAAGTAGTAGGGGAAAGACTCTGGTTGATTTCAGTTCTCTACCACAGCCCAACTTCCAAGAATTTGCTCATCTAGAAAACAAATTGATACGAGAGGAACTCACCTATGACGTTATTGCCCTAAAGCTCGAACACAAAAAATGCAAAGAATTGCTCAACTGCCAACAACTAGAGGTATATGATGCTGTAATTCATGTTGTTGAGAAGCAGGAAAGAGGTGTATTCTTTGTGTACGGACATGGTGGAACTGGCAAGACTTTTTTGTACTCCACGATAGCATCAAAACTTAGGAGTGAAAGGAAGATAGTACTCACCGTTGCATCATCTGGAATTGCATCTCTCCTACTCCCAGGTGGTCATACAGCCCATAGCAGGTTTGATATTCCTATTGAACTTTTTGATGGGGCAAATTGTGGGATTCGGCAGCAAACGCAGCTAGCGGAGCTTATAGTAAGATCCTCTCTTATTATATGGGATGAAGCGCCTATGGACCACAAATTTGCATTTGAGGCTGTTGATAGAACATTGAGAGATATTGTTGGGTTCAGAAACAAAGACGCTTCCATGAAACTCTTTGGCGGAAAAGTTGTCTTATTGGGTGGAGATTTCAGACAGGTGCTGCCTGTGATTCCCAAAGGCAAAAGACAAGATATTGTGCAAGCAACTCTCAATAGATCTTATATTTGGGAGGAGTGCAAAGTTTTCAGGCTATCACAGAGTATGAGAGTACAAAGCCAAATAGCAGAAGGCACACTTGATAAAAGGAAGGAAGATTTCAACACTTGGATCCTTGATATTGGAAATGGAATTGCTCGAGCAATCTCAAGGCATGACGAGGAAGAACCGACATGGATTCAAATTCCTGCAGAGTATTTGATTAAAAGTGAAGACAATCATGTTAAGGACATAGTGAAGAGTACACATCCTCATTTTCATACAAGGTGGTCTGATGAAGATTATCTAAGGGAAAGAGCAATATTGACTCCATTAAATGAAATTGCCAATGATATAAATGATTACATGTTCAACCTAATTGATGGAGAGTCCATGACATATAAAAGTTGTGATGAAATATGCCAAGGGTCAACAGACACTGATGAACAATATCTATCATATCCTACAGAATTCTTTAATACACTTACATTCTCAGGAATGCCAAACCATGTTCTAAAGCTTAAGGTAGGAATGCCAGTGATGTTATTGAGGAACATCAACCCCACTTTTGGATTGTGTAACGGGACAAGATTGATAGTTTCGAAATTGGGAAGATATATTGTGCAAGCAAAGATTATTACTGGGAGTAATATTGGAGCAAAGGTGGCAATTCCAAGAATAATAGTATCATCAAATGATGGAAAATTTCCATTTGTCTTGAAAAGGAGGCAATATCCTCTTCGAGTATGCTATGCAATGACAATCAACAAGAGTCAAGGACAATCACTCAAGATGGTTGGAGTATATCTCCCGAATCCAGTTTTCAGTCATGGACAACTCTATGTTGTTGCTTCAAGAGTTACTTCTCCAGAAGGATTGAAATTTCTCATAAAAGAAACTGATGAAAAATTCAAAGGCTGCACAAGAAACATTGTCTACAAGGAAGTGTTCAACAATATTCCCAAGGAACATAAAGTGCCAGAATGTCAACCAAGTGTCCAATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_293306.p1 GENE.S_Transcript_293306~~S_Transcript_293306.p1 ORF type:complete len:937 (+),score=138.89,PIF1|PF05970.10|4.7e-134 S_Transcript_293306:2084-4894(+)
MIHGPCGNDNKGAPCMLGDTCTKKFPKSFQQETTIDENGYAVYKRRDNGRIVQKGNIILDNRFVVPYNRELLLMFEAHINVEWCNKSRVIKYLFKYLTKGPDRTTILIRKKSKSGENGAPAGDDEIQNYLDCRYLSACEAIWRIFQFVIHHRTPAVIRLHVHLEHEQSLTLRDDQSLADVVGREEGRKTMFTQWMKTNKIYEEARKLTYAEFPSKFVWNEAEKIWDNESQKWKTTKTWTPRKQGICLGRIAYVHPTAGERYYLRLLLNSARGPTSYKDIKTVNGVTYPTFKEACYVLGLLNDDKEWIDAIQEADIWASPNQLRELFVTILLFCEVSDPRQFWETSVGMLCEDILHKRRKFYRHPHLVLTDQQIQTYCLIEIDNILSSRGKTLVDFSSLPQPNFQEFAHLENKLIREELTYDVIALKLEHKKCKELLNCQQLEVYDAVIHVVEKQERGVFFVYGHGGTGKTFLYSTIASKLRSERKIVLTVASSGIASLLLPGGHTAHSRFDIPIELFDGANCGIRQQTQLAELIVRSSLIIWDEAPMDHKFAFEAVDRTLRDIVGFRNKDASMKLFGGKVVLLGGDFRQVLPVIPKGKRQDIVQATLNRSYIWEECKVFRLSQSMRVQSQIAEGTLDKRKEDFNTWILDIGNGIARAISRHDEEEPTWIQIPAEYLIKSEDNHVKDIVKSTHPHFHTRWSDEDYLRERAILTPLNEIANDINDYMFNLIDGESMTYKSCDEICQGSTDTDEQYLSYPTEFFNTLTFSGMPNHVLKLKVGMPVMLLRNINPTFGLCNGTRLIVSKLGRYIVQAKIITGSNIGAKVAIPRIIVSSNDGKFPFVLKRRQYPLRVCYAMTINKSQGQSLKMVGVYLPNPVFSHGQLYVVASRVTSPEGLKFLIKETDEKFKGCTRNIVYKEVFNNIPKEHKVPECQPSVQ*

Click here to download the sequence:
Link to NCBI Protein BLAST