Transcript Information: S_Transcript_293524.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value1E-29
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.35190745434949
Replicate 20.10940226226867
Replicate 30.18290316777124
Condition 2: 8 Hour
Replicate 10.31723721132925
Replicate 20.33280435992982
Replicate 30.24662964171053
Condition 3: 24 Hour
Replicate 10.036107245438999
Replicate 20.14984338232296
Replicate 30.20844664797617


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_293524.p1 GENE.S_Transcript_293524~~S_Transcript_293524.p1 ORF type:3prime_partial len:605 (+),score=84.73,UBN2_3|PF14244.2|3.1e-39,gag_pre-integrs|PF13976.2|6e-10 S_Transcript_293524:403-2214(+)
ATGACCAATAACACAGATAAACCAAATGAAGAAAAGAAGAGAAAGATCATGGATCCCTCCTCTCCATATTTTCTACCAACTAATGACATTCCTGGACTGAATATATGTGGCGTTATGCTTCGTGGCGAAGCCAACTATAGAGAATGGGCTACGGCCTTAAAAAATGCTTTTCGGGCTAAACGGAAATTAGGCTTTCTTGATGGAACAATTGTCATGCCCAATGATGGTGAAGACCTCGAAGATTGGTACAGCGTCAATTCGATGCTTGTTGGATGGGTCATGAATTCAATTGAATCAGGTTTGCGTTCTAATCTTATATACCTTGATTCAGTCAAAGACTTATGGGACAACATAAAAGAACGCTTTAGCACTCCTGATGCTATGCGTTTTCATGAATTAAAGGATGCAATTAATAACTGTAAACAACAAGGACAATCCATAACAGACTATTATGGGAGATTGAATAAATACTGGGAAGAATTTGCAGGATATAGACTCATGCCTATTTGCAAGTGTAGTAAGTGCACTTGTGACATTCATAAACAATTTCTTGATGGTGTTGAAATTGAGAAAACTCATGAATTTTTGATGGGGTTGGATGACGTATATAACGAGCGACGTAGTCATATTCTTGGTTTGGAACCGCTCCCATCTCTTGGCAAGAGTTATCAGATGATACTCAAAGAAGAACGACACCAAAAGATAGTAAGAATAAAAGATGACAAGGGTGAAGCCATTGCCTTTGCTGTTGGGTCTGGACGTGGGAAGCTGCAAATGAATGATGCTCGTCCCTACTGCACTTATTGTAACAAGGAAGGGCATGACCGGACAGGGTGCTTCAAACTCACTGGGAAGTATCCTGACTGGTGGTTCACTCTAGGAAAGGGACGTGGTCGTGGCAGCAATCGAGGTGCATCTGGACGTGACACTCCTGGAGCAGTAGCACATGCCACGCAGTCCTTTGATACGCCCCAAGGTGCTGGCATACCTGTTGATCCAACACAGCCACCACAACTCACTGCTGACCAGTGGAAATCCGTGCTCGCCGCGCTCGGGTCTAGTAAGCCTAGTACTTCTACAACTGAGAAACTCACTGGTAAGAATGCATGGCTTCTTGATAGTGGTGCGTCATATCATATGACGGGTAATCAGTCTCTTTTGACTAATCTTATGGCCTTGCCCGAATCTCCCATAGGACTACCCAATGGCGAAATAACATTTGCAACACATGAAGGCACTGCATCGATTCATGGCTTAACATTGGAACATGTTTTATATGTGCCTAAATTGGAATGTAACTTGATATCCATTGCTCGTCTTGTCGATGCTTTACAGTGTGTTGTCATGTTCACTGATAGTCTTTGTGTGATACAGGACCACACTTCGAGGATGGTGATTGGAGTGGGTGAACGACGTGGTGGGGTCTACTATTTTCATGATGCATCAAAGGCTCAAGCACATCGTGTGGAAACAGTGGACTCTTATGATCTTTGGCATCAACGAATGGGGCATCCCTCTTCACAAGTTGTTCGTTTACTTAGTCATGTGCCTCGTAGCTGTTTTTCAAATATTAAGAATAAAGTGTGTGATGCTTGTTTTAGGGCTAAACAATCTCGTGATGTTTTTGAACTTAGCAAGAGTCGTGCTAGTGAACCTTTTGCTTTAATACATTGTGATGTTTGGGGACCATATCAAGCTACTTCTTCGTCTGGTGCTCATTATTTTCTAACAATAGTTGATGACTTTTCTAGAGCTGTTTGGATTTATTTGATGGGTGAGAAGAGTGAAGTCAAGGTCTTGTTTCCCAAATTT

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_293524.p1 GENE.S_Transcript_293524~~S_Transcript_293524.p1 ORF type:3prime_partial len:605 (+),score=84.73,UBN2_3|PF14244.2|3.1e-39,gag_pre-integrs|PF13976.2|6e-10 S_Transcript_293524:403-2214(+)
MTNNTDKPNEEKKRKIMDPSSPYFLPTNDIPGLNICGVMLRGEANYREWATALKNAFRAKRKLGFLDGTIVMPNDGEDLEDWYSVNSMLVGWVMNSIESGLRSNLIYLDSVKDLWDNIKERFSTPDAMRFHELKDAINNCKQQGQSITDYYGRLNKYWEEFAGYRLMPICKCSKCTCDIHKQFLDGVEIEKTHEFLMGLDDVYNERRSHILGLEPLPSLGKSYQMILKEERHQKIVRIKDDKGEAIAFAVGSGRGKLQMNDARPYCTYCNKEGHDRTGCFKLTGKYPDWWFTLGKGRGRGSNRGASGRDTPGAVAHATQSFDTPQGAGIPVDPTQPPQLTADQWKSVLAALGSSKPSTSTTEKLTGKNAWLLDSGASYHMTGNQSLLTNLMALPESPIGLPNGEITFATHEGTASIHGLTLEHVLYVPKLECNLISIARLVDALQCVVMFTDSLCVIQDHTSRMVIGVGERRGGVYYFHDASKAQAHRVETVDSYDLWHQRMGHPSSQVVRLLSHVPRSCFSNIKNKVCDACFRAKQSRDVFELSKSRASEPFALIHCDVWGPYQATSSSGAHYFLTIVDDFSRAVWIYLMGEKSEVKVLFPKF

Click here to download the sequence:
Link to NCBI Protein BLAST