Transcript Information: S_Transcript_29367.p1


Annotated TAIR IDAT1G71460.1
Annotated Gene NamePentatricopeptide repeat (PPR-like) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:26928247-26930316 | Reverse length=689
E-Value6.6E-263
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.3574416737407
Replicate 20.59228965255073
Replicate 30.66839446209022
Condition 2: 8 Hour
Replicate 11.8033551543347
Replicate 21.8017596219914
Replicate 32.0886669465284
Condition 3: 24 Hour
Replicate 10.29321991262543
Replicate 20.88221548417996
Replicate 31.0156527948369


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_29367.p1 GENE.S_Transcript_29367~~S_Transcript_29367.p1 ORF type:complete len:745 (+),score=111.19,PPR_2|PF13041.2|0.0017,PPR_2|PF13041.2|0.00011,PPR_2|PF13041.2|0.16,PPR_2|PF13041.2|1.1e-05,PPR_2|PF13041.2|6.8e+03,PPR_2|PF13041.2|75,PPR_2|PF13041.2|1.2e-09,PPR_2|PF13041.2|0.22,PPR_2|PF13041.2|0.087,PPR_2|PF13041.2|9.2e-05,PPR_2|PF13041.2|8.3e-06,PPR_2|PF13041.2|0.0026,PPR|PF01535.16|1.2e+02,PPR|PF01535.16|1.8e+03,PPR|PF01535.16|2.9e+03,PPR|PF01535.16|1.4e+03,PPR|PF01535.16|7.1e+03,PPR|PF01535.16|1.1e+03,PPR|PF01535.16|0.0058,PPR|PF01535.16|0.045,PPR|PF01535.16|0.65,PPR|PF01535.16|0.0027,PPR|PF01535.16|2.8e+03,PPR|PF01535.16|0.08,PPR|PF01535.16|0.00027,PPR|PF01535.16|1.3e+04,PPR|PF01535.16|15,PPR|PF01535.16|0.066,PPR|PF01535.16|0.82,PPR|PF01535.16|1.2e+02,PPR_3|PF13812.2|4.8e+03,PPR_3|PF13812.2|1.2e+03,PPR_3|PF13812.2|7e+02,PPR_3|PF13812.2|2.5e+02,PPR_3|PF13812.2|1e+04,PPR_3|PF13812.2|0.024,PPR_3|PF13812.2|0.11,PPR_3|PF13812.2|1.2e+03,PPR_3|PF13812.2|0.26,PPR_3|PF13812.2|3.9e+03,PPR_3|PF13812.2|0.5,PPR_3|PF13812.2|0.045,PPR_3|PF13812.2|20,PPR_3|PF13812.2|5.5,PPR_3|PF13812.2|2.9e+02,PPR_1|PF12854.3|4.1e+02,PPR_1|PF12854.3|89,PPR_1|PF12854.3|4e+03,PPR_1|PF12854.3|2.5e+02,PPR_1|PF12854.3|0.63,PPR_1|PF12854.3|0.091,PPR_1|PF12854.3|2.5e+03,PPR_1|PF12854.3|1.7,PPR_1|PF12854.3|0.06,PPR_1|PF12854.3|5e+02,PPR_1|PF12854.3|1.1e+02,PPR_1|PF12854.3|1.1,PPR_1|PF12854.3|28,PPR_1|PF12854.3|0.17,PPR_1|PF12854.3|1.2e+03 S_Transcript_29367:122-2236(+)
ATGGCTACAGCAGTGAGAACTTCACTAACTGTATCACCATCACCATCTCCACCAACATGTGCTTCATTTCCTTTCAATTGCCCTTCCTATCCCGCCAAATGCAAAACCACCAAAAACAGAAGTTCCAGAGTTCACAATAAAACTCAAAACCCAACACTTGACCAGAACCCAAAAACCCAGAAAATTTCCACAAAAAACAAAGGAGAGGAAGAACCAACCTATGCTTGGTCAATTCCACTCCACAAGAAAAACCCAAATGCCATTTACAAAGACATTCAAAGATTTGCTAGAAAAAATAAGCTCAAAGAAGCCCTCACTATATTAGACTATCTTGACCATCTGGGTATACCTGTAAATGTCTCAACTTTTTCTCACCTTATAGCTGCTTGTATTAGATCAAAATCTAATATTTATGCTAAAACAATCCATACCCATATCAGGATTAATGGGCTTGAAAATATTGAGTTCCTTAAACCCAAGATTGTTCAAATGTATGCTTCTTGTGGGTCATTGGAGGTTGCCCAAAGATTGTTGCTTGATGATGATAAAAATGATGGTAATAATGGGACTTGTGATAATGTTTATGCATGGAATGCTTTGCTTAGAGGAAATGTGGTTTCAGGGGGGAGGAAATATAAGGATTTGTTGTATACTTTTTCTAGGATGAGAGAAAAAAAGGTTGACTTTAATGTGTATAGTTTTTCTTGTATGATCAAGAGTTTTGGTGGGGCTGTGGCTTTTAGGCAAGGCTTAAAGATGCATGCTTTATTGATTAAGAATGGGTTCATTGGAAGCTCAATTCTTATGACAAGTTTGATTGATATGTACTTTAAATGTGGGAGGATTAAACTTGCCTGCCTACTGTTTGATGAAATTCCGGAAAGAGATGTTGTTTTATGGGGGACCATGATTGCAGGGTTTGCACACAATAATAATCAGAAAGAAGCAATAAGGTATATGAGGTTGATGATGAAGGAAGGTGTAGTTCCTAATTCGGTCGTGCTCACTATGATCCTGCCTATTCTAGGGGAAGTTGGGGCATGGAAGCTGGGCAAGGAGATTCATGCCTATGTATGCAAAAAAGGGAACTATTCAGAGCATCCCTTTGTGAAGTCTGCTTTGATTGACATGTATTGTAAATGTGGGGACATGACTTACGGGAGAAAGGTTTTTTACGGTTCAAAGATTAGGAGCACAGTCTCATGGACTGCTCTGATATCTGGTTATATATCAAATGGCAGGCTCGAGCAGGCTGTGAGATCCATAATGTGGATGCAACAAGAGGGTTTTAGGCCTGATGTTGTTTCATTGGCAACTGTCCTTCCAGTTTGCACTAAGTTGCGAGCGGTAAGGCAAGGCAGGGAGATTCATGGATATATGGTGAAAAATGGGTTTCTTCCTAATGTATCATTGATTACATCATTGATTGTGATGTACTCGAAATGTGGTGTGTTGGAGCAGAGTCGTCGATTGTTTCATAGCATGGAGAAAAGAAATGTGATTGCATGGACTGCTTTTATCAATTCATGCTTTGAAAATGGGCAGCCCTATGAAGCCCTTGATGTGTTCAGGTCAATGCAGTTGTCTAAGCACAGGGCAGATTCAGTTGCAATGTCACGAGTGCTAGACATTTGCAGCGAACTGAGGATGTTGAAACTTGGGAAAGAGGTGCACGGGCAGGTCTTAAAGAAAGATATCGAATGTGTCCCTTTTGTTACGGCTGGGCTTATCAAAGTGTATGGAAGATGTGGAGGAATCGTAAAGGCCAAAATGGTTTTTGATCTTTACCCGAGCCTAGGCTCAGTAGCTTTGACTGCAATGACAGAGGTTTATGGATACAATAAATATTTCAAAGAAGCACTTGCTCTTTTCGATCAAATGGTGGATGTTGGTCTGGTGCCACATGTAATCACCTTCAATGTGGTCTTATCACTTTGTGATCAAGCTGGATTTGCAGATGAGGCTTGTAGAATCTTTCAACTTATGACTCAAAGATGTAGGATCAAACCATTGAAAGAACATTACAATATAATTGCTGGACTTCTTACTCGTGCAGGTCGAGTCCAGGAAGGTGAAAGATATATACAATGGAGTTCCAGGTTGAACTCTTCATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_29367.p1 GENE.S_Transcript_29367~~S_Transcript_29367.p1 ORF type:complete len:745 (+),score=111.19,PPR_2|PF13041.2|0.0017,PPR_2|PF13041.2|0.00011,PPR_2|PF13041.2|0.16,PPR_2|PF13041.2|1.1e-05,PPR_2|PF13041.2|6.8e+03,PPR_2|PF13041.2|75,PPR_2|PF13041.2|1.2e-09,PPR_2|PF13041.2|0.22,PPR_2|PF13041.2|0.087,PPR_2|PF13041.2|9.2e-05,PPR_2|PF13041.2|8.3e-06,PPR_2|PF13041.2|0.0026,PPR|PF01535.16|1.2e+02,PPR|PF01535.16|1.8e+03,PPR|PF01535.16|2.9e+03,PPR|PF01535.16|1.4e+03,PPR|PF01535.16|7.1e+03,PPR|PF01535.16|1.1e+03,PPR|PF01535.16|0.0058,PPR|PF01535.16|0.045,PPR|PF01535.16|0.65,PPR|PF01535.16|0.0027,PPR|PF01535.16|2.8e+03,PPR|PF01535.16|0.08,PPR|PF01535.16|0.00027,PPR|PF01535.16|1.3e+04,PPR|PF01535.16|15,PPR|PF01535.16|0.066,PPR|PF01535.16|0.82,PPR|PF01535.16|1.2e+02,PPR_3|PF13812.2|4.8e+03,PPR_3|PF13812.2|1.2e+03,PPR_3|PF13812.2|7e+02,PPR_3|PF13812.2|2.5e+02,PPR_3|PF13812.2|1e+04,PPR_3|PF13812.2|0.024,PPR_3|PF13812.2|0.11,PPR_3|PF13812.2|1.2e+03,PPR_3|PF13812.2|0.26,PPR_3|PF13812.2|3.9e+03,PPR_3|PF13812.2|0.5,PPR_3|PF13812.2|0.045,PPR_3|PF13812.2|20,PPR_3|PF13812.2|5.5,PPR_3|PF13812.2|2.9e+02,PPR_1|PF12854.3|4.1e+02,PPR_1|PF12854.3|89,PPR_1|PF12854.3|4e+03,PPR_1|PF12854.3|2.5e+02,PPR_1|PF12854.3|0.63,PPR_1|PF12854.3|0.091,PPR_1|PF12854.3|2.5e+03,PPR_1|PF12854.3|1.7,PPR_1|PF12854.3|0.06,PPR_1|PF12854.3|5e+02,PPR_1|PF12854.3|1.1e+02,PPR_1|PF12854.3|1.1,PPR_1|PF12854.3|28,PPR_1|PF12854.3|0.17,PPR_1|PF12854.3|1.2e+03 S_Transcript_29367:122-2236(+)
MATAVRTSLTVSPSPSPPTCASFPFNCPSYPAKCKTTKNRSSRVHNKTQNPTLDQNPKTQKISTKNKGEEEPTYAWSIPLHKKNPNAIYKDIQRFARKNKLKEALTILDYLDHLGIPVNVSTFSHLIAACIRSKSNIYAKTIHTHIRINGLENIEFLKPKIVQMYASCGSLEVAQRLLLDDDKNDGNNGTCDNVYAWNALLRGNVVSGGRKYKDLLYTFSRMREKKVDFNVYSFSCMIKSFGGAVAFRQGLKMHALLIKNGFIGSSILMTSLIDMYFKCGRIKLACLLFDEIPERDVVLWGTMIAGFAHNNNQKEAIRYMRLMMKEGVVPNSVVLTMILPILGEVGAWKLGKEIHAYVCKKGNYSEHPFVKSALIDMYCKCGDMTYGRKVFYGSKIRSTVSWTALISGYISNGRLEQAVRSIMWMQQEGFRPDVVSLATVLPVCTKLRAVRQGREIHGYMVKNGFLPNVSLITSLIVMYSKCGVLEQSRRLFHSMEKRNVIAWTAFINSCFENGQPYEALDVFRSMQLSKHRADSVAMSRVLDICSELRMLKLGKEVHGQVLKKDIECVPFVTAGLIKVYGRCGGIVKAKMVFDLYPSLGSVALTAMTEVYGYNKYFKEALALFDQMVDVGLVPHVITFNVVLSLCDQAGFADEACRIFQLMTQRCRIKPLKEHYNIIAGLLTRAGRVQEGERYIQWSSRLNSS*

Click here to download the sequence:
Link to NCBI Protein BLAST