Transcript Information: S_Transcript_293943.p1


Annotated TAIR IDAT5G18475.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:6129255-6130775 | Reverse length=506
E-Value1.7E-204
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.4614971312459
Replicate 20.12753057547696
Replicate 30.28428109570097
Condition 2: 8 Hour
Replicate 10.45198322444791
Replicate 20.81900794634837
Replicate 30.61606495968154
Condition 3: 24 Hour
Replicate 10.21045167139301
Replicate 20.087336460795173
Replicate 30.34018171644665


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_293943.p1 GENE.S_Transcript_293943~~S_Transcript_293943.p1 ORF type:complete len:519 (+),score=88.93,PPR_2|PF13041.2|0.27,PPR_2|PF13041.2|5.1e+03,PPR_2|PF13041.2|1.6e+02,PPR_2|PF13041.2|2.9e-15,PPR_2|PF13041.2|4.2e-19,PPR_2|PF13041.2|1.9e-17,PPR_2|PF13041.2|7.4e-10,PPR_2|PF13041.2|2.7e-15,PPR_2|PF13041.2|4.7e-08,PPR_2|PF13041.2|0.029,PPR_1|PF12854.3|69,PPR_1|PF12854.3|2.4e-09,PPR_1|PF12854.3|4.6e-14,PPR_1|PF12854.3|1.9e-11,PPR_1|PF12854.3|7.6e-14,PPR_1|PF12854.3|9.3e-11,PPR_1|PF12854.3|1.1e-07,PPR_1|PF12854.3|0.32,PPR_1|PF12854.3|15,PPR_1|PF12854.3|1.2e+02,PPR|PF01535.16|1.4e+03,PPR|PF01535.16|52,PPR|PF01535.16|1.6e+02,PPR|PF01535.16|5.6e+03,PPR|PF01535.16|3.5e-05,PPR|PF01535.16|2.3e-10,PPR|PF01535.16|5.3e-07,PPR|PF01535.16|3.4e-08,PPR|PF01535.16|3.5e-08,PPR|PF01535.16|0.019,PPR|PF01535.16|1.5,PPR|PF01535.16|8.5,PPR_3|PF13812.2|4.2e+03,PPR_3|PF13812.2|0.033,PPR_3|PF13812.2|2.5e+03,PPR_3|PF13812.2|2.3e+03,PPR_3|PF13812.2|0.00011,PPR_3|PF13812.2|1.2e-06,PPR_3|PF13812.2|8.2e-05,PPR_3|PF13812.2|0.00014,PPR_3|PF13812.2|5.1e-05,PPR_3|PF13812.2|1.5,PPR_3|PF13812.2|9.5,PPR_3|PF13812.2|4.8e+02,TPR_19|PF14559.2|2.3e+02,TPR_19|PF14559.2|1.1e+03,TPR_19|PF14559.2|27,TPR_19|PF14559.2|1.2e+02,TPR_19|PF14559.2|0.43,TPR_19|PF14559.2|5.8e+02,TPR_12|PF13424.2|7.6,TPR_12|PF13424.2|1.9,TPR_12|PF13424.2|1.9e+02,TPR_12|PF13424.2|46,TPR_12|PF13424.2|1.4e+02,TPR_12|PF13424.2|2e+03 S_Transcript_293943:201-1757(+)
ATGAGATTTTCATCACCCAAGCTTCCCTGTTTCTATTCTTCTTCTTCTCATAGACCATCTTCTTCACTGCCATGGATATCACCCTCCCTTTACGCGAAAGGGAAAAGTCCGAAACCAGACCCTCCACCATCCCCACCTGCAGCAGAATTATCATTATCATCAGAGCATGAACCTCAGAAGAAACTAAGGTTTATCTCCCATGAAGGTGCGATCGACTTGATCAAACACGAAAAGGATCCTCAACGTGCCTTGGACATATTCAACAAGGTGTCTGAGCAAAAGGGGTTCAATCACAACAATGCCACCTATGCTACCATCCTTCACAGGCTCGCCAAGTCGAAAAAGTTCAATGTTGTTGATGCCATTCTTCGTCAAATGAAGTATGAACCCTGCAAGTTTCATGAGGGTATTTTCATAAACCTTATGAAGCATTTCTCCAAGTTCTCCATGCATGAAAGGGTGGTTGAAATGTTTGATTCGATTAGGCCATACGCGAGACAAAGGCCTTCGCTTAATGCTATCAGCACTTGTCTTAATCTGTTGGTGGAATCGAATCAAATGGACTTGGCGCGGAAGTTTCTTTTGAATGCCAAAAAAGGTCTCAACTTGAAGCCAAATACTTGTATTTTTAACATTTTGGTCAAGCATCACTGCAAGCAGGGTGACCTTGAATCAGCCTTTGAGGTAGTCAAGGAGATGAGGAAATCAAGAGTGTCCTATCCCAACCTGATTACTTACACAACCTTGATGGATGGTCTGTGTAGGAGAGGTAGACTCAAGGAAGCACTTGAGCTATTTGAAGAAATGGTGTCTAAGGATCATATAGTTCCCGATGTCTTAACTTATAACATCCTGATCAATGGGTTTTGCCATGGTGGGAAGGTTGATCGAGCAAGGAAAATAATGGAGTTCATGTGCGACAATGGATGCAACCCAAATGTGTTCAACTACACAGCTCTTATGAATGGATTTTGCAAGGAAGGTAGAATACAAGAGGCTATGGAGGTTCTTGACCAGATGAAAAGCGTGGGTATGAAGCTTGATACGATTGGCTACACCACATTGATTAACTTCTTCTGTAGGGATGGGAAGCTTGAAGACGCACTGCATTTACTGAAAGAAATGAAAGAAGCAGGGTGCAAAGCAGATGCTGTGACTTTCAAGATCATCGTTGAAGGCCTGTGTAGGCAGAAGAAGTTCCAGGAGGCCATCCAAATGCTCGAAAGGTTACCTTATGAAGGTGTTTACCCAGACAAAGCTAGTTACCGAATTGCGTTAAACTCCTTGTGCTACTCTAATGAGTTAGAGAGGGCTGCTTGGCTGTTGGGGTTGATGCTTGGCAGGGGTTTTGTTCCTCATCATGCTACTTCGAATGAGCTATTGGTTCGCCTGTGTGAGGCTGGACACGCTGATGATGCACTCGAAGCTTTGTTTGAGTTATTAGAGATGGGATTCAAACCTGAGCCTAATTCATGGCTGATTTTGATAGAAACAATCTGTCGAGAGAGAAAACTGTTGCCTACATTTGTTTTACTTGAGCAGCTTACTGAAGTATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_293943.p1 GENE.S_Transcript_293943~~S_Transcript_293943.p1 ORF type:complete len:519 (+),score=88.93,PPR_2|PF13041.2|0.27,PPR_2|PF13041.2|5.1e+03,PPR_2|PF13041.2|1.6e+02,PPR_2|PF13041.2|2.9e-15,PPR_2|PF13041.2|4.2e-19,PPR_2|PF13041.2|1.9e-17,PPR_2|PF13041.2|7.4e-10,PPR_2|PF13041.2|2.7e-15,PPR_2|PF13041.2|4.7e-08,PPR_2|PF13041.2|0.029,PPR_1|PF12854.3|69,PPR_1|PF12854.3|2.4e-09,PPR_1|PF12854.3|4.6e-14,PPR_1|PF12854.3|1.9e-11,PPR_1|PF12854.3|7.6e-14,PPR_1|PF12854.3|9.3e-11,PPR_1|PF12854.3|1.1e-07,PPR_1|PF12854.3|0.32,PPR_1|PF12854.3|15,PPR_1|PF12854.3|1.2e+02,PPR|PF01535.16|1.4e+03,PPR|PF01535.16|52,PPR|PF01535.16|1.6e+02,PPR|PF01535.16|5.6e+03,PPR|PF01535.16|3.5e-05,PPR|PF01535.16|2.3e-10,PPR|PF01535.16|5.3e-07,PPR|PF01535.16|3.4e-08,PPR|PF01535.16|3.5e-08,PPR|PF01535.16|0.019,PPR|PF01535.16|1.5,PPR|PF01535.16|8.5,PPR_3|PF13812.2|4.2e+03,PPR_3|PF13812.2|0.033,PPR_3|PF13812.2|2.5e+03,PPR_3|PF13812.2|2.3e+03,PPR_3|PF13812.2|0.00011,PPR_3|PF13812.2|1.2e-06,PPR_3|PF13812.2|8.2e-05,PPR_3|PF13812.2|0.00014,PPR_3|PF13812.2|5.1e-05,PPR_3|PF13812.2|1.5,PPR_3|PF13812.2|9.5,PPR_3|PF13812.2|4.8e+02,TPR_19|PF14559.2|2.3e+02,TPR_19|PF14559.2|1.1e+03,TPR_19|PF14559.2|27,TPR_19|PF14559.2|1.2e+02,TPR_19|PF14559.2|0.43,TPR_19|PF14559.2|5.8e+02,TPR_12|PF13424.2|7.6,TPR_12|PF13424.2|1.9,TPR_12|PF13424.2|1.9e+02,TPR_12|PF13424.2|46,TPR_12|PF13424.2|1.4e+02,TPR_12|PF13424.2|2e+03 S_Transcript_293943:201-1757(+)
MRFSSPKLPCFYSSSSHRPSSSLPWISPSLYAKGKSPKPDPPPSPPAAELSLSSEHEPQKKLRFISHEGAIDLIKHEKDPQRALDIFNKVSEQKGFNHNNATYATILHRLAKSKKFNVVDAILRQMKYEPCKFHEGIFINLMKHFSKFSMHERVVEMFDSIRPYARQRPSLNAISTCLNLLVESNQMDLARKFLLNAKKGLNLKPNTCIFNILVKHHCKQGDLESAFEVVKEMRKSRVSYPNLITYTTLMDGLCRRGRLKEALELFEEMVSKDHIVPDVLTYNILINGFCHGGKVDRARKIMEFMCDNGCNPNVFNYTALMNGFCKEGRIQEAMEVLDQMKSVGMKLDTIGYTTLINFFCRDGKLEDALHLLKEMKEAGCKADAVTFKIIVEGLCRQKKFQEAIQMLERLPYEGVYPDKASYRIALNSLCYSNELERAAWLLGLMLGRGFVPHHATSNELLVRLCEAGHADDALEALFELLEMGFKPEPNSWLILIETICRERKLLPTFVLLEQLTEV*

Click here to download the sequence:
Link to NCBI Protein BLAST