Transcript Information: S_Transcript_29407.p1


Annotated TAIR IDAT3G54460.1
Annotated Gene NameSNF2 domain-containing protein / helicase domain-containing protein / F-box family protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:20162050-20167186 | Reverse length=1378
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.8993006692159
Replicate 25.8974908758305
Replicate 35.9619743304128
Condition 2: 8 Hour
Replicate 18.3385730916035
Replicate 28.2041094422562
Replicate 37.9738222263111
Condition 3: 24 Hour
Replicate 17.8178301741007
Replicate 26.6756440578343
Replicate 35.8876200857303


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_29407.p1 GENE.S_Transcript_29407~~S_Transcript_29407.p1 ORF type:complete len:1358 (+),score=258.28,SNF2_N|PF00176.19|1.7e-84,zf-CW|PF07496.11|4.3e-13,zf-CW|PF07496.11|3.4e+03,Helicase_C|PF00271.27|1.8e-11,Helicase_C|PF00271.27|3.3e+03 S_Transcript_29407:46-4119(+)
ATGGAGGTCGATTCTTCTTCTTCATCATCATCAATAATTCCAGAGCACAAATTATGCGGGTTCTTCTCAACAGTCCTGAAACTCTCCAATCCTCAATCAAAACAAACCCTAGAAATCGGCACTCTTCTCCACATCTTCTCCGAGGGCCCTGCCGTCGGCTTCAAATCCGATGCCGGCGTCATCTTCTCCCCAATGTCCTCGAATTGGGAGGAAACCAAAACGACGTCGCCTAATACTACAACTACGAAGAAGAAAAGGAAGGCGGTGAAGAAGAAGATAGGGGTAGTAGGTCACGGGAGTGGGACAGTGAGTGTGGTTCATCAAGTCAGGACTCTCGTTAATCAGAAGTGCTTGAAGATTGTTGCCAGAATTGTTGGTCTTGTGATTCCAGAAAATGAGAATGAGAATAATAATAATGAAGAGGAGGATTTAAGGGTGGTGGCATTAGTGGATGTTTATTTGCCTGTGACAGTTTGGTCTTCTCAGTGGCAGTTTCCTAGGTCTTCTACTACTGCTGCTGCTCTGTTTCGCCATTTGAGTTGTGACTGGGACAAGAGAAGTTCAATTCTTAAAGAGGGCTACGATAAGAATGTATTTGAAGACCATAAGTGTGTATGGAATCTTGCTGACTGTCATGTTCTCGGATGTAAGCGGCATTCAGATGTTCCTGATTCCTCTAATAGAAAGGGATATGAACTTCATGAGATCTTTAAGAGCTTACCTAGCTTGACCAGGGAATTCAGACCTGTTTCTTCAAGAATATCACCTAATGATTTGGATTCGACGTGTGGTATTTGGGATTTAACGGATGATATTCTGGTCAACATTGTATCTACTCTGCATCCGAGAGATCTTGTGAGGGTTTCTGCTACATGTCGTCATCTGAGGTTCTTGTGCGCACCAATTATGCCATGTATAAAGCTTAAACTATTTCCTCATCAACAAGCTGCTGTTGAGTGGATGGTGCAACGCGAACGAAACGTTACTCGATTGTGTCATCCCCTGTACTTGGACTTCATAACTGAAGATGGGTTTGCTTTCTACATTAACATTGTCTCTGGTGAATTAGTCACTGGATCGGCTCCTACTATTAGTGATTTTCGTGGGGGAATGTTTTGTGATGAGCCTGGACTTGGTAAAACCATTACAGCCCTTTCTCTTGTTTTGAAGACCCAAGGAACACTGGCAGATCCCCCAGAAGGGGCTCAAATAATCTGGTGCACACATAGTGGTGATCAGAAATGTGGCTACTATGAGTGCAGTGGCAGTAGATATTCAGGTTTGACTATCCCATCATCTGGACAAAAATGTACAAGTCAGAATGATCGAAGAAGCCAATTTTCTCCTAATGAGTTGGTTCCCAAGAACTACAAGACCCCAAAGAAGTCCCGCTTATCAACTCCTAGTAGGCAGAATGAGTCATCCATGTATTCTTGTCCAGAAATTCTTGCTGTGACAACACCGGAGCTTTCACGTTCGACACCTGCAACATGTGTAGTGCGGTGCACCAGGAGCTTGAATCGTGTTAAGAAAAATCTTCTCCATACTTATGAAGGGACACTTGGACATCCTAAAGACACTAAGACTGGAAGGTATTTAGGCAAACAGAAGCACTCTGCCAGCAGTGTGGCTAATGTTGCGCTGGAGAAGCAATTTGGGACCTCATATTCTTATCCTTTTGCAAACAAAAGGCAAAGGAAGGATTCTGATGAGCATTGTTTTGTATACAATGAAACATGGGTTCAGTGTGATGCTTGTCGGAAATGGCGGAGGGTTTCGGATGACAAGCTAGCTGATTCAACAGCTGCGTGGTTTTGCAGTTTGAACTCTGATCCCTTGCATCAGAGTTGCAATGCTCCTGAAGAATCCTTTGATGATGGCCAGCCCATTACTTATTTGCCTGGATTTTGCAGCAAAGAAACTTCTGGTGGGCTGCCTCAAAATGTAGCATTCTTTACTAGTGTCCTAAAGGAGCATTACTCATTACTCAACTGTCAAACGAAGAAGGCTTTGACTTGGTTGGCTAGACTTCCTCCTCACAAACTTTCAGAAACAGAGACAGTTGGATTGGTTCGGCCTGGTCAGGTAACTACACAAGAGGCCAATGGTTTCCACAAAATTTTTCAATCATTTGGTCTTGTGCAGAGGATGGAGCAGGGTATCAGCCGGTGGTTTTATCCCAAAAAGATAGACAATCTGGTTTTGGATTTGCCTGCTCTCAGAATTGCACTCTGTGAACCACTAGATTCATTCAGGATGTACTTGTCAAGAGCAACACTCATTGTTGTTCCATCAAATTTAGTTGATCACTGGAAAGCACAGATCCAGAAGCATGTAAGACCTGGGCAACTGCGGGTTTATGTTTGGACTGACCATAAGAAGCCTTCTGCACATAGCCTTGCTTGGGACTATGATGTTGTTATTACAACCTTTAGCCGGCTCAGTGCTGAGTGGAATCCTCGTAAGAGAAGTGCCTTGATGCAAGTACATTGGCTTAGGGTCATGCTAGATGAGGGACACACCCTTGGTTCGAGCATAAACCTGACTAATAAGATGCAAATGGCAGTTTCATTGAATGCTACAAATCGCTGGATATTAACAGGGACGCCCACACCTAATACTCCTAACAGTCAGGTTGCACAGCTTCAGCCCATGCTGAAATTTCTCCATGATGAAGCATATGGAGAAAATTATAAAAACTGGGATGCTGTCATCCTTAAGCCTTTCGAGGCAGAGGTAACGGAGGGCAGGTTGCGTCTGGTGCAGTTACTGAAGAGGTGCATGATTAGTGCAAGAAAAACTGACTTGCAATGCATTCCGCCATGTCTTAAGAAAACAACATTCATTAATTTTACAGACGAGCATGCAAAAACTTACAATGAGCTTGTTGTTACTGTTCGACGTAACATTTTGATGGCAGATTGGAATGATCCTTCTCATGTTGAAAGCTTACTTAACCCGAAGCAGTGGAAATTTAGGCGTACCACTATTAGAAATGTCAGACTGTCTTGCTGTGTAGCTGGGCATATTAAAGTAGCACATGCTGGCGAGGATATTCAGGAAACAATGGATATTTTAGTTCAAAGTGGTTTGGATCCACTTTCATTGGAATATGCTTTCATAAAATACAACCTTTCTTTTGGTGGTAACTGCCAGAGATGCCAAGAATGGTGCCGCCTACCTATTGTCACACCATGCAGGCATCTTCTGTGCCTTGATTGTGTTGCTTTGGATAGTGAAAAGTGTACATTTCCTGGCTGTGGCTTTGCTTATGAGATGCAGAGTCCTGAAATATTAACACGACCTGAAAACCCAAATCCAAAGTGGGCTGTCCCAAAAGACCTTATCGAGCTACAACCATCATATAAGCAGGATAGCTGGGATCCAGATTGGCAATCGACTTCTAGCAGTAAAGTTGCATATCTTGTTCAGAGATTGAAGGATATTCAGGCTGCTAATAGCCCGTTAGATTGCTCAAGAGATGATGGAAATTATGCAGAAACAAAGCATGACCTTGTTTCACATCCTGAATTGCTTAGAAGACCAAGAAATGAGACATCAGTTGAGAAAGTCCTGGTATTTTCTCAGTTCCTTGAGCACATACATGTCATTGAACAGCAGTTAGCCATTGCGGATATCAAATATGTTGGGATGTTTAGTCCAATGAATGCAAGCAATAAGAAAAGGTCACTCTCCGTCTTTCAGTATGATCCAAGTTGCATGGTGCTTGTAATGGATGGGAGTGCTGCACTAGGTCTTGATTTGAGCTTTGTGACTCACGTTTTCCTGATGGAACCAATCTGGGATAGAAGCATGGAGGAGCAAGTGATCAGTCGTGCTCATCGGATGGGCGCAGTATGTCCTATTTATGTTGAGACCTTAGCAATGCGTGGTAGTATTGAAGAGCAAATGCTGGAATTTTTGCAGAATATTGATGAGTGCAGAAGGTTATTGAAAGAAGACCATGAGAAAACTGAACATGAAGGAGCACGAGCACACAGATCACTACATGATTTCGCAGAGAGGAATTATCTGGCTCGTTTGGGCATGGTGCGAACAAAGGCACAAAGGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_29407.p1 GENE.S_Transcript_29407~~S_Transcript_29407.p1 ORF type:complete len:1358 (+),score=258.28,SNF2_N|PF00176.19|1.7e-84,zf-CW|PF07496.11|4.3e-13,zf-CW|PF07496.11|3.4e+03,Helicase_C|PF00271.27|1.8e-11,Helicase_C|PF00271.27|3.3e+03 S_Transcript_29407:46-4119(+)
MEVDSSSSSSSIIPEHKLCGFFSTVLKLSNPQSKQTLEIGTLLHIFSEGPAVGFKSDAGVIFSPMSSNWEETKTTSPNTTTTKKKRKAVKKKIGVVGHGSGTVSVVHQVRTLVNQKCLKIVARIVGLVIPENENENNNNEEEDLRVVALVDVYLPVTVWSSQWQFPRSSTTAAALFRHLSCDWDKRSSILKEGYDKNVFEDHKCVWNLADCHVLGCKRHSDVPDSSNRKGYELHEIFKSLPSLTREFRPVSSRISPNDLDSTCGIWDLTDDILVNIVSTLHPRDLVRVSATCRHLRFLCAPIMPCIKLKLFPHQQAAVEWMVQRERNVTRLCHPLYLDFITEDGFAFYINIVSGELVTGSAPTISDFRGGMFCDEPGLGKTITALSLVLKTQGTLADPPEGAQIIWCTHSGDQKCGYYECSGSRYSGLTIPSSGQKCTSQNDRRSQFSPNELVPKNYKTPKKSRLSTPSRQNESSMYSCPEILAVTTPELSRSTPATCVVRCTRSLNRVKKNLLHTYEGTLGHPKDTKTGRYLGKQKHSASSVANVALEKQFGTSYSYPFANKRQRKDSDEHCFVYNETWVQCDACRKWRRVSDDKLADSTAAWFCSLNSDPLHQSCNAPEESFDDGQPITYLPGFCSKETSGGLPQNVAFFTSVLKEHYSLLNCQTKKALTWLARLPPHKLSETETVGLVRPGQVTTQEANGFHKIFQSFGLVQRMEQGISRWFYPKKIDNLVLDLPALRIALCEPLDSFRMYLSRATLIVVPSNLVDHWKAQIQKHVRPGQLRVYVWTDHKKPSAHSLAWDYDVVITTFSRLSAEWNPRKRSALMQVHWLRVMLDEGHTLGSSINLTNKMQMAVSLNATNRWILTGTPTPNTPNSQVAQLQPMLKFLHDEAYGENYKNWDAVILKPFEAEVTEGRLRLVQLLKRCMISARKTDLQCIPPCLKKTTFINFTDEHAKTYNELVVTVRRNILMADWNDPSHVESLLNPKQWKFRRTTIRNVRLSCCVAGHIKVAHAGEDIQETMDILVQSGLDPLSLEYAFIKYNLSFGGNCQRCQEWCRLPIVTPCRHLLCLDCVALDSEKCTFPGCGFAYEMQSPEILTRPENPNPKWAVPKDLIELQPSYKQDSWDPDWQSTSSSKVAYLVQRLKDIQAANSPLDCSRDDGNYAETKHDLVSHPELLRRPRNETSVEKVLVFSQFLEHIHVIEQQLAIADIKYVGMFSPMNASNKKRSLSVFQYDPSCMVLVMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGAVCPIYVETLAMRGSIEEQMLEFLQNIDECRRLLKEDHEKTEHEGARAHRSLHDFAERNYLARLGMVRTKAQR*

Click here to download the sequence:
Link to NCBI Protein BLAST