Transcript Information: S_Transcript_296121.p1


Annotated TAIR IDAT1G18485.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:6363172-6366084 | Forward length=970
E-Value9E-74
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20
Replicate 30.063160055080824
Condition 2: 8 Hour
Replicate 10
Replicate 20.30646367999626
Replicate 30.1459989561985
Condition 3: 24 Hour
Replicate 10.22443373449241
Replicate 20.23284737920905
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_296121.p1 GENE.S_Transcript_296121~~S_Transcript_296121.p1 ORF type:5prime_partial len:292 (-),score=43.37,PPR_2|PF13041.2|1.3e+02,PPR_2|PF13041.2|9.8,PPR_2|PF13041.2|7.1e-07,PPR_2|PF13041.2|99,PPR_2|PF13041.2|4.7e-13,PPR_2|PF13041.2|6.5,PPR|PF01535.16|1.7e+02,PPR|PF01535.16|4.3,PPR|PF01535.16|1.3e-05,PPR|PF01535.16|41,PPR|PF01535.16|2e-09,PPR|PF01535.16|1e+03,PPR|PF01535.16|0.062,PPR_3|PF13812.2|1.2e+03,PPR_3|PF13812.2|2.2e+02,PPR_3|PF13812.2|0.0048,PPR_3|PF13812.2|4.5e+03,PPR_3|PF13812.2|2.6e+03,PPR_3|PF13812.2|2.3e-06,PPR_3|PF13812.2|1.6e+04,PPR_3|PF13812.2|0.88,PPR_1|PF12854.3|1.3e+03,PPR_1|PF12854.3|6.7e+03,PPR_1|PF12854.3|0.78,PPR_1|PF12854.3|2.5e+03,PPR_1|PF12854.3|0.0011,PPR_1|PF12854.3|37,PPR_1|PF12854.3|6.2 S_Transcript_296121:198-1073(-)
GCCGAAAAGGTGTTTGATCTTTTGAGGGAAATGCAAATGGTGGGAGGTGAAATCAAGATCAATGAGGTCACCATTTTGAATGTATTACCTGTATTCTCAAACGAGTCACGGTTGATGAGGTTAAAAGAACTTCATTGCTACTCATACAAACATGGATTTCTTCAACAAGAATTGGTGTGTAATGCGTTTATAGCTGCCTATTCGAAATGTGAGTCATTAAGTTCAGCTAGTTCTCTCTTTAGTGGGACTGAGATCAAAACAGTGAACTCTTGGAATGCACTAATTGATGGCCAGGCACAATATGGAGATCCGAGAAAGGCTATTGATTTGTACCTCGAAATGACATCTTTAGGCTTGCTTCCAGACAGTTTTAGCTTAAGAAGTATAGTTTTGGCCTGTTCTGAACTTGGATTGTCACTGTCTGGGAAAGAAATCCATGGATTTGTGGTGAGAAATGGGCTAGAAAAAGATCCATTTCTAACTGTTTCACTGCTTTCATTTTACTTCCGGTGTGACAAATCACATTATGCTCGCGTTTTGTTTGATAGAATAGAGAATAGAAATTTAGTTTCCTGGAATGCAATGATTACTGGGTGCACACAGAATGGACTTCCAGAGGAAGCTCTGGATGTCTTCCGTTACATGCTTGTAGAAGGCATTCGGCCCAATGAGATTACAGTAACAAGTCTGCTTGGAGCTTGTTCACAGATTTCAAGCTTGCAGTTGGGGAAAGAAATCCACTGCTTCACCTTGAAGGCTCTTCTAACAAAAGACATGATCGTTACTTCTTCTGTCATAGACATGTATGCTAAATGTGGAAGTATTAGGGATTCCAGTAAACTATTGAGTGAGATGGCTATTCGAGACTTAGTTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_296121.p1 GENE.S_Transcript_296121~~S_Transcript_296121.p1 ORF type:5prime_partial len:292 (-),score=43.37,PPR_2|PF13041.2|1.3e+02,PPR_2|PF13041.2|9.8,PPR_2|PF13041.2|7.1e-07,PPR_2|PF13041.2|99,PPR_2|PF13041.2|4.7e-13,PPR_2|PF13041.2|6.5,PPR|PF01535.16|1.7e+02,PPR|PF01535.16|4.3,PPR|PF01535.16|1.3e-05,PPR|PF01535.16|41,PPR|PF01535.16|2e-09,PPR|PF01535.16|1e+03,PPR|PF01535.16|0.062,PPR_3|PF13812.2|1.2e+03,PPR_3|PF13812.2|2.2e+02,PPR_3|PF13812.2|0.0048,PPR_3|PF13812.2|4.5e+03,PPR_3|PF13812.2|2.6e+03,PPR_3|PF13812.2|2.3e-06,PPR_3|PF13812.2|1.6e+04,PPR_3|PF13812.2|0.88,PPR_1|PF12854.3|1.3e+03,PPR_1|PF12854.3|6.7e+03,PPR_1|PF12854.3|0.78,PPR_1|PF12854.3|2.5e+03,PPR_1|PF12854.3|0.0011,PPR_1|PF12854.3|37,PPR_1|PF12854.3|6.2 S_Transcript_296121:198-1073(-)
AEKVFDLLREMQMVGGEIKINEVTILNVLPVFSNESRLMRLKELHCYSYKHGFLQQELVCNAFIAAYSKCESLSSASSLFSGTEIKTVNSWNALIDGQAQYGDPRKAIDLYLEMTSLGLLPDSFSLRSIVLACSELGLSLSGKEIHGFVVRNGLEKDPFLTVSLLSFYFRCDKSHYARVLFDRIENRNLVSWNAMITGCTQNGLPEEALDVFRYMLVEGIRPNEITVTSLLGACSQISSLQLGKEIHCFTLKALLTKDMIVTSSVIDMYAKCGSIRDSSKLLSEMAIRDLV*

Click here to download the sequence:
Link to NCBI Protein BLAST