Transcript Information: S_Transcript_298240.p1


Annotated TAIR IDAT4G01400.1
Annotated Gene NameFUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: COG4 transport (InterPro:IPR013167), Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G46100.1); Has 26268 Blast hits to 8959 proteins in 289 species: Archae - 0; Bacteria - 3; Metazoa - 247; Fungi - 222; Plants - 25350; Viruses - 0; Other Eukaryotes - 446 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr4:573098-577243 | Reverse length=1110
E-Value1E-80
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.2430701213885
Replicate 20.93684881348258
Replicate 31.0963834614455
Condition 2: 8 Hour
Replicate 11.1771977669755
Replicate 21.567454363293
Replicate 31.3576972996803
Condition 3: 24 Hour
Replicate 11.0667352872265
Replicate 21.3473178856427
Replicate 31.3387497030316


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_298240.p1 GENE.S_Transcript_298240~~S_Transcript_298240.p1 ORF type:complete len:471 (+),score=58.26,PPR_2|PF13041.2|7.3e+02,PPR_2|PF13041.2|2.4,PPR_2|PF13041.2|0.00012,PPR_2|PF13041.2|3.7e-15,PPR_2|PF13041.2|6.4e-13,PPR_2|PF13041.2|3.1e-14,PPR_2|PF13041.2|3.2e-12,PPR_2|PF13041.2|0.00054,PPR_2|PF13041.2|0.0081,PPR_1|PF12854.3|2.6e-08,PPR_1|PF12854.3|2e-05,PPR_1|PF12854.3|8.7e-10,PPR_1|PF12854.3|2.7e-09,PPR_1|PF12854.3|0.0067,PPR_1|PF12854.3|0.00069,PPR|PF01535.16|17,PPR|PF01535.16|0.24,PPR|PF01535.16|1.1e+04,PPR|PF01535.16|2.9e-06,PPR|PF01535.16|0.00011,PPR|PF01535.16|2.1e-07,PPR|PF01535.16|4.1e-05,PPR|PF01535.16|0.011,PPR|PF01535.16|0.0078,PPR_3|PF13812.2|0.68,PPR_3|PF13812.2|0.72,PPR_3|PF13812.2|81,PPR_3|PF13812.2|0.024,PPR_3|PF13812.2|0.004,PPR_3|PF13812.2|0.0055,PPR_3|PF13812.2|0.0081,PPR_3|PF13812.2|0.14,PPR_3|PF13812.2|0.17 S_Transcript_298240:108-1520(+)
ATGATGAAACTCCATCAGCCTCGTCTTCTTTCCTGGTACAATCTACTTCACATCACTCGCACTTCTTCTTACCTCCATATACTCACATTCCACTCTTCAATTCAATCACCATCACAAGGAACTGCAAAACCAGCAGAACCCCAGAAAGACTTGGACTTTATCTCAAAAACCCAAATAGCATCCCCATCTCGAATCCAAAAGCTAATATCTTCCCAATCTGACCCTCTCTTAGCTAAAGAGATCTTCGATTTGGCCTCACGTCAACCCAATTTCCGTCACTCTTACCCCACTTTTCACACCCTCATTCTCAAACTAGCCCGTGCTCGTCAATTTTCTTTAATGGAAGACATTCTCTCTCAACTCAAACGCCTTGGTTATCCTACCACTCCAGGCCTCTTTTCCCACTTAATTCGCATATATGGCGAGGCCCATTTGCCTGAAAAGGCCCTTAAGACCTTCTATCGTATCATTGAGTTCAATTGTCAACCCACCTCAAAGCACCTTAACCTTGTCCTTGCTATCCTTTTGGCTCATAGGAACTTCCTTAGACCCGCTTTTGACCTTTTTAGGATTGTCCATAAGTATGGAGTGGACCCCAATGTGGAAAGTTACAATCTTTTGATGAAGGCATTCTGTTTTAATGGTGAACTTAGTGTTGCCTATAAGCTGTTCAATGAAATGCTCAAGAGAGAAGTGTTGCCTAGTGTTGAGTCTTATAAGATTTTGATGCAAGCTTTGTGTAGGAAAAGTCAGGTTAATAAAGCTGCTGACTTGCTTGATGATATGCTTAATAAGGGTTTTGTGCCTGATACTTTGAGTTATACTACTTTATTAAATAGTTTGTGTAGAAAGAAGCAGCTTAAAGAGGCTTATAAGCTATTGTGTAGGATGAAAGTTAAGGGGTGTAATCCTAATATCACGCATTATAATACGGTTATATTGGGTTTGTGTCGAGAGGGGCGTGCACTTGATGCTATCAAGATTCTGAGTGATATGTATTCCAATGGATGCTTGCCGAATCTGGTGTCTTATAGGACATTGGTTGGTGGGTTAGTTGATCAGGGAGTTTATGTTGAGGCGAGGAAGTATATGGAGGAAATGATGTCGAAAGGGCTTTCTCCGCACTTTTCGATAGCTCATGCTTTGATTAAAGGTTTGTGTAATGCAGGTGAAGTAGAGGATGCTTGTGTGGTGCTTCAAGAGCTGCTCAAACACGGAGAGTCGCCACATATTGAAACTTGGCAGGAAATCGTTCCTAGGATTTGTGAGGTGGAAGAAATAGATAGATTGAGTAGTTTATTGGATGAGGTAATGAAAGTTGAGATAAAACCTCATACAAGAATTGTTGAGGCAGGGGTAGCTTTGGAGGAATATTTGATTAAGAAGATACAGGCAAGGTCTAGAAAACCGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_298240.p1 GENE.S_Transcript_298240~~S_Transcript_298240.p1 ORF type:complete len:471 (+),score=58.26,PPR_2|PF13041.2|7.3e+02,PPR_2|PF13041.2|2.4,PPR_2|PF13041.2|0.00012,PPR_2|PF13041.2|3.7e-15,PPR_2|PF13041.2|6.4e-13,PPR_2|PF13041.2|3.1e-14,PPR_2|PF13041.2|3.2e-12,PPR_2|PF13041.2|0.00054,PPR_2|PF13041.2|0.0081,PPR_1|PF12854.3|2.6e-08,PPR_1|PF12854.3|2e-05,PPR_1|PF12854.3|8.7e-10,PPR_1|PF12854.3|2.7e-09,PPR_1|PF12854.3|0.0067,PPR_1|PF12854.3|0.00069,PPR|PF01535.16|17,PPR|PF01535.16|0.24,PPR|PF01535.16|1.1e+04,PPR|PF01535.16|2.9e-06,PPR|PF01535.16|0.00011,PPR|PF01535.16|2.1e-07,PPR|PF01535.16|4.1e-05,PPR|PF01535.16|0.011,PPR|PF01535.16|0.0078,PPR_3|PF13812.2|0.68,PPR_3|PF13812.2|0.72,PPR_3|PF13812.2|81,PPR_3|PF13812.2|0.024,PPR_3|PF13812.2|0.004,PPR_3|PF13812.2|0.0055,PPR_3|PF13812.2|0.0081,PPR_3|PF13812.2|0.14,PPR_3|PF13812.2|0.17 S_Transcript_298240:108-1520(+)
MMKLHQPRLLSWYNLLHITRTSSYLHILTFHSSIQSPSQGTAKPAEPQKDLDFISKTQIASPSRIQKLISSQSDPLLAKEIFDLASRQPNFRHSYPTFHTLILKLARARQFSLMEDILSQLKRLGYPTTPGLFSHLIRIYGEAHLPEKALKTFYRIIEFNCQPTSKHLNLVLAILLAHRNFLRPAFDLFRIVHKYGVDPNVESYNLLMKAFCFNGELSVAYKLFNEMLKREVLPSVESYKILMQALCRKSQVNKAADLLDDMLNKGFVPDTLSYTTLLNSLCRKKQLKEAYKLLCRMKVKGCNPNITHYNTVILGLCREGRALDAIKILSDMYSNGCLPNLVSYRTLVGGLVDQGVYVEARKYMEEMMSKGLSPHFSIAHALIKGLCNAGEVEDACVVLQELLKHGESPHIETWQEIVPRICEVEEIDRLSSLLDEVMKVEIKPHTRIVEAGVALEEYLIKKIQARSRKP*

Click here to download the sequence:
Link to NCBI Protein BLAST