Transcript Information: S_Transcript_29831.p1


Annotated TAIR IDAT2G42920.1
Annotated Gene NamePentatricopeptide repeat (PPR-like) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr2:17858705-17860384 | Forward length=559
E-Value9.8E-211
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 19.2609344957588
Replicate 214.30444597685
Replicate 314.288053779053
Condition 2: 8 Hour
Replicate 122.965804956912
Replicate 225.403930689799
Replicate 327.171849694262
Condition 3: 24 Hour
Replicate 115.403443486957
Replicate 217.060121900877
Replicate 317.784774901043


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_29831.p1 GENE.S_Transcript_29831~~S_Transcript_29831.p1 ORF type:complete len:546 (+),score=85.72,PPR|PF01535.16|0.0076,PPR|PF01535.16|1.1e+02,PPR|PF01535.16|0.0058,PPR|PF01535.16|7.5e-05,PPR|PF01535.16|6.2e-11,PPR|PF01535.16|32,PPR|PF01535.16|0.085,PPR|PF01535.16|4.1e-05,PPR|PF01535.16|8.9,PPR|PF01535.16|0.009,PPR|PF01535.16|1.5,PPR|PF01535.16|4.6e+02,PPR|PF01535.16|7e+03,PPR_2|PF13041.2|3.6e-06,PPR_2|PF13041.2|0.069,PPR_2|PF13041.2|0.0011,PPR_2|PF13041.2|5.9e-14,PPR_2|PF13041.2|0.6,PPR_2|PF13041.2|4.5e-08,PPR_2|PF13041.2|4.3,PPR_2|PF13041.2|3.1,PPR_2|PF13041.2|19,PPR_2|PF13041.2|1.1e+03,PPR_2|PF13041.2|1.9e+03,PPR_1|PF12854.3|0.74,PPR_1|PF12854.3|0.81,PPR_1|PF12854.3|0.0011,PPR_1|PF12854.3|8.6e-08,PPR_1|PF12854.3|2.9,PPR_1|PF12854.3|0.4,PPR_1|PF12854.3|3.9e+02,PPR_1|PF12854.3|0.075,PPR_1|PF12854.3|1.2e+02,PPR_1|PF12854.3|4e+03,PPR_1|PF12854.3|3.1e+02,PPR_3|PF13812.2|1.7,PPR_3|PF13812.2|1.6e+03,PPR_3|PF13812.2|52,PPR_3|PF13812.2|14,PPR_3|PF13812.2|1.5e-05,PPR_3|PF13812.2|2e+02,PPR_3|PF13812.2|7.5,PPR_3|PF13812.2|0.00055,PPR_3|PF13812.2|2.7,PPR_3|PF13812.2|27,PPR_3|PF13812.2|79,PPR_3|PF13812.2|1.1e+03,TPR_14|PF13428.2|1.6e+04,TPR_14|PF13428.2|6.4e+03,TPR_14|PF13428.2|1.9e+02,TPR_14|PF13428.2|28,TPR_14|PF13428.2|4.4e+02,TPR_14|PF13428.2|8.5e+02,TPR_14|PF13428.2|76 S_Transcript_29831:165-1802(+)
ATGATGGGCGCAAATACACTCAACTTTAGCTTACTAACTCCATCACAAACCAACATCTCAAAGTTCATCTCCAATCATCCCCACCTTTCAATGCTAGAAACCCACTGCACTACCATTCAAGACCTCAAGAAAATCCATGCCCACCTCATAAAAACAGGCTTATCCAAAGACATCATTGCCATCAGCCGTGTACTAGCCTTCTCTGCCACTTCCCCTGCTTCTGACATAAACTATGCTTATTCCATCTTCACTCATATCTCCAATCCAAATCTCTTTGTTTGGAACACCATCATCAGAGGCTTTTCTCAAAGCTCAGCTCCCCAAAATGCCATTTCTTTGTTTATAGACATGTTAATCAACTCACCAATTGACCCCCATAGGCTTACTTACCCTTCCCTCTTCAAAGCTTATGCTCGACTAGGCCTTGCTCAATATGGAGCTCAACTTCATGGGAGGATTGTTAAGTTAGGCCTTGAATGTGATCCTTTCATAAGGAATACAATCATCAATATGTATAGTAATTCGGGTTTTTTGAGTGAAGCCTTGAAGATATTTAACGAGGATGAGAATCTCGATGTAGTGGCTTGGAACTCCATGATTATAGGGCTCGCAAAGAGTGGGGAGATTGATGAGTCGAGAAGATTGTTTGAGAAGTTGGGTTTGAGAAGGAATATCATTTCATGGAATAGTATGATTAGTGGGTGTGTTAGAAATGGGAGACTAGTGGAAGCAATGGAACTTTTTCGAAGAATGCAAGAAGAGGGAACAAGGCCTAGTGAGTTTACTATGGTGAGCTTATTGAATGCTTGTGCTAATCTTGGACCCCTTGAGCAAGGGGAATGGATTTATCATTACATATGCAAATATAAGTTTGAACTCAACGCCATTATGGTTACTGCAATTGTGGACATGTATTACAAGTGCGGTGACATTGAGAAGGCGCGTCGAGTATTTGAGACAATCCCAATTAAAGGCTTGTCATGTTGGAACTCTATGATTTTGGGATTAGCCAATCATGGTCATGAGGAAGAAGCAATGCAATTGTTCTCCGAGCTTGAATTGTCAAACATAGAACCAAATGATGTTACTTTCCTCGGACTTTTGACAGCCTGCAATTACCTTGGTAATGTCAATTTAGCTAGAGAATATTTCAAGCTAATGACCCAAAATTACAATATTGAACCATCAATTAAGCACTATAATTGCATGGTTGACATTTTAGGACAAGCTGGTTTTCTTGGTGAGGCTAGTGAACTAATAAAACATATGCCAGTAGAGCCAGATGCTGTCATATGGGGTTCACTGCTCTCGGCTTGTAAGAAGTATGGAAATGTTGAGATGGCAAAATGGGCAGCAATGCATATTAGGGAAACAGGACCTAATGATAGTGCAGCTTATATACTCATATCTAATATTTATGCAGCTTCTGGCCGATTTGAGGATGCAATCAAACCGCGGATTTTGATGAAGGACAAGCAAATCTTGAAAGAGATTGGATGCAGTTCAATTGAAATCAATGGGGAAGTTCAAGAGTTTGCTTCTGGTGGAAATTTGAATGCTCAAATGCAAGAGCTGATGATGCTTTTGCATTCTTTTTGTAAGGATGAAGATTTTCCAACACAAGAAGTAAGAATATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_29831.p1 GENE.S_Transcript_29831~~S_Transcript_29831.p1 ORF type:complete len:546 (+),score=85.72,PPR|PF01535.16|0.0076,PPR|PF01535.16|1.1e+02,PPR|PF01535.16|0.0058,PPR|PF01535.16|7.5e-05,PPR|PF01535.16|6.2e-11,PPR|PF01535.16|32,PPR|PF01535.16|0.085,PPR|PF01535.16|4.1e-05,PPR|PF01535.16|8.9,PPR|PF01535.16|0.009,PPR|PF01535.16|1.5,PPR|PF01535.16|4.6e+02,PPR|PF01535.16|7e+03,PPR_2|PF13041.2|3.6e-06,PPR_2|PF13041.2|0.069,PPR_2|PF13041.2|0.0011,PPR_2|PF13041.2|5.9e-14,PPR_2|PF13041.2|0.6,PPR_2|PF13041.2|4.5e-08,PPR_2|PF13041.2|4.3,PPR_2|PF13041.2|3.1,PPR_2|PF13041.2|19,PPR_2|PF13041.2|1.1e+03,PPR_2|PF13041.2|1.9e+03,PPR_1|PF12854.3|0.74,PPR_1|PF12854.3|0.81,PPR_1|PF12854.3|0.0011,PPR_1|PF12854.3|8.6e-08,PPR_1|PF12854.3|2.9,PPR_1|PF12854.3|0.4,PPR_1|PF12854.3|3.9e+02,PPR_1|PF12854.3|0.075,PPR_1|PF12854.3|1.2e+02,PPR_1|PF12854.3|4e+03,PPR_1|PF12854.3|3.1e+02,PPR_3|PF13812.2|1.7,PPR_3|PF13812.2|1.6e+03,PPR_3|PF13812.2|52,PPR_3|PF13812.2|14,PPR_3|PF13812.2|1.5e-05,PPR_3|PF13812.2|2e+02,PPR_3|PF13812.2|7.5,PPR_3|PF13812.2|0.00055,PPR_3|PF13812.2|2.7,PPR_3|PF13812.2|27,PPR_3|PF13812.2|79,PPR_3|PF13812.2|1.1e+03,TPR_14|PF13428.2|1.6e+04,TPR_14|PF13428.2|6.4e+03,TPR_14|PF13428.2|1.9e+02,TPR_14|PF13428.2|28,TPR_14|PF13428.2|4.4e+02,TPR_14|PF13428.2|8.5e+02,TPR_14|PF13428.2|76 S_Transcript_29831:165-1802(+)
MMGANTLNFSLLTPSQTNISKFISNHPHLSMLETHCTTIQDLKKIHAHLIKTGLSKDIIAISRVLAFSATSPASDINYAYSIFTHISNPNLFVWNTIIRGFSQSSAPQNAISLFIDMLINSPIDPHRLTYPSLFKAYARLGLAQYGAQLHGRIVKLGLECDPFIRNTIINMYSNSGFLSEALKIFNEDENLDVVAWNSMIIGLAKSGEIDESRRLFEKLGLRRNIISWNSMISGCVRNGRLVEAMELFRRMQEEGTRPSEFTMVSLLNACANLGPLEQGEWIYHYICKYKFELNAIMVTAIVDMYYKCGDIEKARRVFETIPIKGLSCWNSMILGLANHGHEEEAMQLFSELELSNIEPNDVTFLGLLTACNYLGNVNLAREYFKLMTQNYNIEPSIKHYNCMVDILGQAGFLGEASELIKHMPVEPDAVIWGSLLSACKKYGNVEMAKWAAMHIRETGPNDSAAYILISNIYAASGRFEDAIKPRILMKDKQILKEIGCSSIEINGEVQEFASGGNLNAQMQELMMLLHSFCKDEDFPTQEVRI*

Click here to download the sequence:
Link to NCBI Protein BLAST