Transcript Information: S_Transcript_29833.p1


Annotated TAIR IDAT2G42920.1
Annotated Gene NamePentatricopeptide repeat (PPR-like) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr2:17858705-17860384 | Forward length=559
E-Value2E-119
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20
Replicate 30.78567709773186
Condition 2: 8 Hour
Replicate 13.2992195782112
Replicate 21.6553161549574
Replicate 33.3455366196159
Condition 3: 24 Hour
Replicate 14.1142829892599
Replicate 22.3375231670672
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_29833.p1 GENE.S_Transcript_29833~~S_Transcript_29833.p1 ORF type:complete len:446 (+),score=70.64,PPR_2|PF13041.2|2.7e-06,PPR_2|PF13041.2|0.054,PPR_2|PF13041.2|0.00088,PPR_2|PF13041.2|4.5e-14,PPR_2|PF13041.2|0.46,PPR_2|PF13041.2|3.5e-08,PPR_2|PF13041.2|2.9e+03,PPR_2|PF13041.2|1.5e+03,PPR|PF01535.16|0.0059,PPR|PF01535.16|87,PPR|PF01535.16|0.0045,PPR|PF01535.16|5.8e-05,PPR|PF01535.16|4.8e-11,PPR|PF01535.16|25,PPR|PF01535.16|0.066,PPR|PF01535.16|3.2e-05,PPR|PF01535.16|4.7e+03,PPR|PF01535.16|5.5e+03,PPR_1|PF12854.3|0.58,PPR_1|PF12854.3|0.63,PPR_1|PF12854.3|0.00088,PPR_1|PF12854.3|6.7e-08,PPR_1|PF12854.3|2.3,PPR_1|PF12854.3|0.32,PPR_1|PF12854.3|4.7e+02,PPR_1|PF12854.3|4.4e+03,PPR_1|PF12854.3|2.5e+02,PPR_3|PF13812.2|1.3,PPR_3|PF13812.2|1.3e+03,PPR_3|PF13812.2|41,PPR_3|PF13812.2|11,PPR_3|PF13812.2|1.1e-05,PPR_3|PF13812.2|1.5e+02,PPR_3|PF13812.2|5.4,PPR_3|PF13812.2|0.00042,PPR_3|PF13812.2|3.6e+03 S_Transcript_29833:165-1502(+)
ATGATGGGCGCAAATACACTCAACTTTAGCTTACTAACTCCATCACAAACCAACATCTCAAAGTTCATCTCCAATCATCCCCACCTTTCAATGCTAGAAACCCACTGCACTACCATTCAAGACCTCAAGAAAATCCATGCCCACCTCATAAAAACAGGCTTATCCAAAGACATCATTGCCATCAGCCGTGTACTAGCCTTCTCTGCCACTTCCCCTGCTTCTGACATAAACTATGCTTATTCCATCTTCACTCATATCTCCAATCCAAATCTCTTTGTTTGGAACACCATCATCAGAGGCTTTTCTCAAAGCTCAGCTCCCCAAAATGCCATTTCTTTGTTTATAGACATGTTAATCAACTCACCAATTGACCCCCATAGGCTTACTTACCCTTCCCTCTTCAAAGCTTATGCTCGACTAGGCCTTGCTCAATATGGAGCTCAACTTCATGGGAGGATTGTTAAGTTAGGCCTTGAATGTGATCCTTTCATAAGGAATACAATCATCAATATGTATAGTAATTCGGGTTTTTTGAGTGAAGCCTTGAAGATATTTAACGAGGATGAGAATCTCGATGTAGTGGCTTGGAACTCCATGATTATAGGGCTCGCAAAGAGTGGGGAGATTGATGAGTCGAGAAGATTGTTTGAGAAGTTGGGTTTGAGAAGGAATATCATTTCATGGAATAGTATGATTAGTGGGTGTGTTAGAAATGGGAGACTAGTGGAAGCAATGGAACTTTTTCGAAGAATGCAAGAAGAGGGAACAAGGCCTAGTGAGTTTACTATGGTGAGCTTATTGAATGCTTGTGCTAATCTTGGACCCCTTGAGCAAGGGGAATGGATTTATCATTACATATGCAAATATAAGTTTGAACTCAACGCCATTATGGTTACTGCAATTGTGGACATGTATTACAAGTGCGGTGACATTGAGAAGGCGCGTCGAGTATTTGAGACAATCCCAATTAAAGGCTTGTCATGTTGGAACTCTATGATTTTGGGATTAGCCAATCATGGTCATGAGGAAGAAGCAATGCAATTGTTCTCCGAGCTTGAATTGTCAAACATAGAACCAAATGATGTTACTTTCCTCGGACTTTTGACAGCCTGCAATTACCTTGCTTCTGGCCGATTTGAGGATGCAATCAAACCGCGGATTTTGATGAAGGACAAGCAAATCTTGAAAGAGATTGGATGCAGTTCAATTGAAATCAATGGGGAAGTTCAAGAGTTTGCTTCTGGTGGAAATTTGAATGCTCAAATGCAAGAGCTGATGATGCTTTTGCATTCTTTTTGTAAGGATGAAGATTTTCCAACACAAGAAGTAAGAATATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_29833.p1 GENE.S_Transcript_29833~~S_Transcript_29833.p1 ORF type:complete len:446 (+),score=70.64,PPR_2|PF13041.2|2.7e-06,PPR_2|PF13041.2|0.054,PPR_2|PF13041.2|0.00088,PPR_2|PF13041.2|4.5e-14,PPR_2|PF13041.2|0.46,PPR_2|PF13041.2|3.5e-08,PPR_2|PF13041.2|2.9e+03,PPR_2|PF13041.2|1.5e+03,PPR|PF01535.16|0.0059,PPR|PF01535.16|87,PPR|PF01535.16|0.0045,PPR|PF01535.16|5.8e-05,PPR|PF01535.16|4.8e-11,PPR|PF01535.16|25,PPR|PF01535.16|0.066,PPR|PF01535.16|3.2e-05,PPR|PF01535.16|4.7e+03,PPR|PF01535.16|5.5e+03,PPR_1|PF12854.3|0.58,PPR_1|PF12854.3|0.63,PPR_1|PF12854.3|0.00088,PPR_1|PF12854.3|6.7e-08,PPR_1|PF12854.3|2.3,PPR_1|PF12854.3|0.32,PPR_1|PF12854.3|4.7e+02,PPR_1|PF12854.3|4.4e+03,PPR_1|PF12854.3|2.5e+02,PPR_3|PF13812.2|1.3,PPR_3|PF13812.2|1.3e+03,PPR_3|PF13812.2|41,PPR_3|PF13812.2|11,PPR_3|PF13812.2|1.1e-05,PPR_3|PF13812.2|1.5e+02,PPR_3|PF13812.2|5.4,PPR_3|PF13812.2|0.00042,PPR_3|PF13812.2|3.6e+03 S_Transcript_29833:165-1502(+)
MMGANTLNFSLLTPSQTNISKFISNHPHLSMLETHCTTIQDLKKIHAHLIKTGLSKDIIAISRVLAFSATSPASDINYAYSIFTHISNPNLFVWNTIIRGFSQSSAPQNAISLFIDMLINSPIDPHRLTYPSLFKAYARLGLAQYGAQLHGRIVKLGLECDPFIRNTIINMYSNSGFLSEALKIFNEDENLDVVAWNSMIIGLAKSGEIDESRRLFEKLGLRRNIISWNSMISGCVRNGRLVEAMELFRRMQEEGTRPSEFTMVSLLNACANLGPLEQGEWIYHYICKYKFELNAIMVTAIVDMYYKCGDIEKARRVFETIPIKGLSCWNSMILGLANHGHEEEAMQLFSELELSNIEPNDVTFLGLLTACNYLASGRFEDAIKPRILMKDKQILKEIGCSSIEINGEVQEFASGGNLNAQMQELMMLLHSFCKDEDFPTQEVRI*

Click here to download the sequence:
Link to NCBI Protein BLAST