Transcript Information: S_Transcript_29838.p1


Annotated TAIR IDAT3G22270.1
Annotated Gene NameTopoisomerase II-associated protein PAT1
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:7874480-7877857 | Forward length=782
E-Value1.7E-225
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 115.588052507142
Replicate 216.47727321384
Replicate 317.020799009261
Condition 2: 8 Hour
Replicate 122.675098565053
Replicate 223.375878670739
Replicate 321.413964279803
Condition 3: 24 Hour
Replicate 117.923362403675
Replicate 214.370264877523
Replicate 316.717948880721


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_29838.p1 GENE.S_Transcript_29838~~S_Transcript_29838.p1 ORF type:complete len:869 (+),score=195.18 S_Transcript_29838:188-2794(+)
ATGATGGGAGGTAGAAGTGAGCTCTGCATGGCTCAATTGGATAACAATGAAGATATCAGCTTCAATCGCCGAGATTTCGATCCAAATGGAAACCCTAGATATCTTGGCCCTCAGAATTTCTCCCAACCCAAGGTCCCAACCCGATCAAGGAAGCCTGGAGCTATTGGTGATACAGTTTCTGGATCCTTTTCTACCGAAAGTAATTCACTTTTTGATGCATCCCAGTATGCATTCTTTGGTCAAAGTGCTGTTGAGGAGGTTGAGTTGGGTGGCTTAGAGGATGATGATAATGACAATCCTCTGCAAAGCGATGAATATCATTTGTTCAATAAAGATGAGGAGCACGACATGGCTTTAGGGTCGTTATCTGAGGTGGATGATCTGGCAACCACATTCTCAAAGTTGAACAGAGTTGTGACAGGACCAAGGAATCCAGGGGTTATTGGTGACCGAGGGTCTGGATCTTTGTCAAGAGAAAGCTCATCTGTTGCAGATTGGTCACGGGATGGCTGGTCAGACCAGAATGTGTTGGATGTGGAGAATTCTCTGGAAAGTAGGTGGTCATCTCACCCTCATTGCTCGTCCAGTCATCCTGTGGAATATAAACCATTGTACAGAGCATTGTCTTACCCAGAACAGCATCTACAACAGCAACATATTCAGCAACACTTCTCAAGTGAAACCCTGTCATCTCCAAAATCGTCTTTCACATCTTTTCCTCCTCCTGGTGGCAGACCGCAGCAGCCTTTGTCTCACCGTCATTCACTTCCTCTGAACATTTCTTCTCTGAACTCCGGTCCTGATTTAGCTTTTTCAGCACCAAATATGTCACCGATGTCTGACTCTGGTCTTCATTTTGCTGGGTTACCCTTGGCTCATGGATTACGTTATGGAGGAAGCATGTCAGGCCTAACACCCAGTCACGGAGTCGGTAATCAGCCACGAAATCAGTGGAGCAACCATGCTGGTTTGTTGCATGGGGACCATTCAATGATTCTGAACAATGTATTACAACAGCAATTGACTCACCAAAATGGTTTAGTCTCGTCCTCACCACTAATGTCACCACGGCAACAGTTGCAACAACAGGGATTGCATCAGCAGTTATCATCACTGGCACATATCTCATTTTTGCAGTCCCAGATGATTGGTGGTCATCCATCACCACCCTCGCATGTTTTGAGAAAATATGACACTATGTATGGTATTGGTGAGGTGAGGGAACAAAGACCGAAATCAATCCGAGGTAAGCAGAATCACCGTTTTAGTCAGCAAGGATCTGATTCTGCTGGCCAGAAGAGTGATAGTACGCAATTCAGATCAAAGTATATGACTGCTGAAGAGATAGATGGTATTCTGAAGATGCAACATACTACTCACAGCAATGACCCTTATATAGATGATTACTACCACCAAGCCTGTGCTGCAAAAAAATCCTCTGGATCACGGCTGAAACACCACTTTGCTCCTTTGCACCTCCGTGATCTGCCTACTCGTGTACGTAACATTAGCTCAGATCAGCATGGTCATCAATCATTGGATTCTTTAAGAAGGCTTGCCTTGTCATCCATCCGGAGACCTCGGCCTCTTCTTGAAATTGAATCTTCTTCCTCAGGATGCAGTGATGGCTGTGCAGAACGTAGATCGTTGGAACAGGAACCAATGTTTGCTGCTCGAATTGCTGTTGAGGATGGTCTTGCTCTTCTTCTTGATGTAGATGATATTGACCGTTTTCTGCAATTTAGCCCCCCACCAGATGGTGGTTCTCAGCTGAGGCGGAAACGATTGGTTCTGCTCGAGGCTTTGGCAGCTGCCTTCCAGCTTGTTGATCCTCTTGGGAGTGGGGCCCATACAGTTGGTCAGGGGGACGATGTCGTGTTCATGCGGCTTGTTTCCCTCCCAAAAGGTCGTAAACTTCTCTCCAAGTACCTTCAGCTGCTTACTATCAGCCCTGGGCCTGCAAGTGAGCTGGCTCGAGTTGTCTGCATGGCAGTTTTCCGCCATTTAAGGTTTCTGTTTGGTGGTCTTCCATCTGAACCTGGAGCAGTCGAGGCTACTGTAAGTCTTGCTAAGGGAGTTTGCATGTGTGTCAGTGGCATGGATATCCGTGGTCTTAGTGCTTCTCTTGCTGCCGTGGTTTGTTCTTCAGAGCAGCCGCCACTTCGCCCACTTGGAAGCCCTGCTGGGGACCATGCCTCTGTTGTCATAAAATCTGTACTTGAAAGAGCTACTGAACTGCTTACCAGTCCTAATCCTCAGGCTGCAGGCAGTTGTAATATATCCAATCGTAACTTCTGGAAGGCTTCATTTGGTACTTTCTTTACCCTACTTGCAAAGTACTGCGTAAGTAAATATGACACCATGATGCAGTCTATCTTAGATCAAGCACAATCAAATTCAGAAATTACAAGTTCAGAAGCAGCAAGGGCTGTCCGCAAGGAGATGCCAGTTGAGCTCCTTCGTGCCAGTCTTCCTCATACAGATGAACACCAGCGCAGGATGTTGATGGATTTTGCTCACCAATCAATTCCATTTCCTGTCACTGGACTCAATCTTCATGAGGAGGAAAATAATGGCCTAATCACTTCAGAATCTGTCAGGATTTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_29838.p1 GENE.S_Transcript_29838~~S_Transcript_29838.p1 ORF type:complete len:869 (+),score=195.18 S_Transcript_29838:188-2794(+)
MMGGRSELCMAQLDNNEDISFNRRDFDPNGNPRYLGPQNFSQPKVPTRSRKPGAIGDTVSGSFSTESNSLFDASQYAFFGQSAVEEVELGGLEDDDNDNPLQSDEYHLFNKDEEHDMALGSLSEVDDLATTFSKLNRVVTGPRNPGVIGDRGSGSLSRESSSVADWSRDGWSDQNVLDVENSLESRWSSHPHCSSSHPVEYKPLYRALSYPEQHLQQQHIQQHFSSETLSSPKSSFTSFPPPGGRPQQPLSHRHSLPLNISSLNSGPDLAFSAPNMSPMSDSGLHFAGLPLAHGLRYGGSMSGLTPSHGVGNQPRNQWSNHAGLLHGDHSMILNNVLQQQLTHQNGLVSSSPLMSPRQQLQQQGLHQQLSSLAHISFLQSQMIGGHPSPPSHVLRKYDTMYGIGEVREQRPKSIRGKQNHRFSQQGSDSAGQKSDSTQFRSKYMTAEEIDGILKMQHTTHSNDPYIDDYYHQACAAKKSSGSRLKHHFAPLHLRDLPTRVRNISSDQHGHQSLDSLRRLALSSIRRPRPLLEIESSSSGCSDGCAERRSLEQEPMFAARIAVEDGLALLLDVDDIDRFLQFSPPPDGGSQLRRKRLVLLEALAAAFQLVDPLGSGAHTVGQGDDVVFMRLVSLPKGRKLLSKYLQLLTISPGPASELARVVCMAVFRHLRFLFGGLPSEPGAVEATVSLAKGVCMCVSGMDIRGLSASLAAVVCSSEQPPLRPLGSPAGDHASVVIKSVLERATELLTSPNPQAAGSCNISNRNFWKASFGTFFTLLAKYCVSKYDTMMQSILDQAQSNSEITSSEAARAVRKEMPVELLRASLPHTDEHQRRMLMDFAHQSIPFPVTGLNLHEEENNGLITSESVRI*

Click here to download the sequence:
Link to NCBI Protein BLAST