Transcript Information: S_Transcript_29843.p1


Annotated TAIR IDAT3G18480.1
Annotated Gene NameCCAAT-displacement protein alternatively spliced product
Annotated Gene Symbol(s)AtCASP, CASP
Annotation TypeOrtholog
Chromosome Positionchr3:6336924-6341596 | Forward length=689
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 117.806942261314
Replicate 220.867587194955
Replicate 319.009789462452
Condition 2: 8 Hour
Replicate 121.887406460191
Replicate 222.339093370854
Replicate 322.595422644226
Condition 3: 24 Hour
Replicate 120.885371770656
Replicate 219.710547695974
Replicate 322.452420202504


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_29843.p1 GENE.S_Transcript_29843~~S_Transcript_29843.p1 ORF type:complete len:683 (+),score=193.76,CASP_C|PF08172.8|2.2e+03,CASP_C|PF08172.8|6.7,CASP_C|PF08172.8|3.9e+02,CASP_C|PF08172.8|1.6e+04,CASP_C|PF08172.8|3.1e-66 S_Transcript_29843:337-2385(+)
ATGGAGGTTCCACAAGGTGGAGGAGGAGAGAGAGAGAAATCGAACTCCTCAACTGCTTCTCCAGTCTCCGTTGTCGCCAATTTCTGGAAAGAATTCGATTTGGAAAAGGAAAGGAGCTTATTAGATGAGCAAGGGCTTCGTATAGCGGAAAACCAGGAGAACAGCCAAAAGAATCGACGTAAACTTGCTGAGAGCACTCGAGATTTTAAGAAAGCTTCACCGGAGGATAAGTTGAGTTTATTTAATTCCTTGCTCAAAGGATATCAGGAAGAAGTCGATAACCTTACTAAAAGAGCGAAATTCGGTGAAAATGCATTTCTTAACATATATCAGAAGCTCTATGAGGCTCCAGATCCTTATCCAGCTCTTGCCTCAATCGCTGAGCAAGACATGAAAATCTCTGAACTTGAGTCGGAGAACCGGAAGATGAAACTTGAGCTTGAAGAATTTAGAGCTGAAGCAGCACATTTGAAAAATCAACAAGCAACCATAAGGAGAATGGAAGAACGCAATCGCCAATTAGAACAACAGATGGAGGAAAAAGTGAAAGAAATAGTGGAGATCAAGCAGCGCAGTTTAGCAGAGGAGAACCAAAAGACAATGGATGTGTTAAAAGAACGAGAGCAATCACTGCAGGACCAGTTGCGTCAAGCTAAAGAAAGTGTTACAACTATGCAAAAGTTGCATGAACTTGCACAGAGCCAGTTGTTTGAGCTTCGTGCTCAGTCAGAGGAAGAGAGGGCTGCAAAGCAATCAGAGCTTACCCTTTTGATGGATGAAGTTGAACGGGCTCAAAGCCGACTTTTGAGTCTGGAGAGGGAGAAGGGACTACTACGTTCTCAGCTACAGTCTGCGAATGAGGAGAGTGATACTAAGAAAAGTGATACTTTTGATTCAAGCACCATTCTTGAGAACTCTTTGAGTGCAAAGGAGAAGATTATCTCTGAACTGAATATGGAACTTCATAATGTTGAGACAACCTTGTCTAATGAGAGGGAGCAACATATTAATGAAATTAAGAAACTGAATGCACTTCTCAATGAAAAGGAAAGTTCCCTTGAGGAGTTACGAAAAGATCTGCATGCTCGTCCAACAGCAAAATTAGTTGAAGATCTTCGTAAAAAAGTTAAAATTCTGCAGGCAGTGGGTTACAACTCCATCGAGGCTGAAGATTGGGAAGTAGCTACTACTGGGGAAGAAATGAGCAAATTGGAATCATTATTGCTTGACAAGAACAGAAAAATGGAGCATGAACTCACACAATTGAAGGTCAAACTGTCTGAGAAGACATCATTGCTTGAGGCTGCAGAATCAAAGGCATCAGAACTTACTGCTAAGGTTGATGAACAGAAAAAGTTAATTCAGAAGCTTGAGGATGATATATTGAAGGGTTATAGCTCGAAAGAGAGATCATCATCTTTATTTCATGATTGGGATCTATCAGAGTCTGTTTCAGCTGAGGCATCTGAGAGTGCAGAACAGAAACATATTTCTGCTGATCAGGATCAAAGTTCAATGCTGAAGGTGATTTGTAATCAGAGAGATCGATTCCGAGCTCGGCTTCGAGAGACTGAAGAAGAAATAAGGCAGCTCAAGGATAAGATCCGGGCACTGACAGATGAATTGGAAAAAACAAAGGCTGACAATGTGAAGCTTTATGGGAAAATTCGTTATGTCCAAGATTACAATCATGAGAAAGTAGTTTCTAGGGCATCAAAAAGGAGTACTGATGATCTAGAAAGTGGCTTCAGCTCTGATGTTGAGTCCAAGTATAAGAAGATGTATGAAGAGGATATAAATCCATTTGCTGCTTTCTCCAAAAAGGAGCGGGATCAAAGGTACAAGGAGCTTGGTCTCAGGGACAAAATTACACTGACCAGTGGTCGCTTCCTTCTTGGCAACAAATATGCTCGTACTTTTGCATTCTTCTACACAATTGGTTTGCATATTCTGGTTTTCACCTGTTTGTACAGAATGTCTGCCTTGAGCCATCTAAGTCATGGCTCTGAAGAAGTTGCTGAACAAACCATTCTGCCTCGCGGACTCTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_29843.p1 GENE.S_Transcript_29843~~S_Transcript_29843.p1 ORF type:complete len:683 (+),score=193.76,CASP_C|PF08172.8|2.2e+03,CASP_C|PF08172.8|6.7,CASP_C|PF08172.8|3.9e+02,CASP_C|PF08172.8|1.6e+04,CASP_C|PF08172.8|3.1e-66 S_Transcript_29843:337-2385(+)
MEVPQGGGGEREKSNSSTASPVSVVANFWKEFDLEKERSLLDEQGLRIAENQENSQKNRRKLAESTRDFKKASPEDKLSLFNSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPALASIAEQDMKISELESENRKMKLELEEFRAEAAHLKNQQATIRRMEERNRQLEQQMEEKVKEIVEIKQRSLAEENQKTMDVLKEREQSLQDQLRQAKESVTTMQKLHELAQSQLFELRAQSEEERAAKQSELTLLMDEVERAQSRLLSLEREKGLLRSQLQSANEESDTKKSDTFDSSTILENSLSAKEKIISELNMELHNVETTLSNEREQHINEIKKLNALLNEKESSLEELRKDLHARPTAKLVEDLRKKVKILQAVGYNSIEAEDWEVATTGEEMSKLESLLLDKNRKMEHELTQLKVKLSEKTSLLEAAESKASELTAKVDEQKKLIQKLEDDILKGYSSKERSSSLFHDWDLSESVSAEASESAEQKHISADQDQSSMLKVICNQRDRFRARLRETEEEIRQLKDKIRALTDELEKTKADNVKLYGKIRYVQDYNHEKVVSRASKRSTDDLESGFSSDVESKYKKMYEEDINPFAAFSKKERDQRYKELGLRDKITLTSGRFLLGNKYARTFAFFYTIGLHILVFTCLYRMSALSHLSHGSEEVAEQTILPRGL*

Click here to download the sequence:
Link to NCBI Protein BLAST