Transcript Information: S_Transcript_300486.p1


Annotated TAIR IDAT1G72500.1
Annotated Gene NameLOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: inter-alpha-trypsin inhibitor heavy chain-related (TAIR:AT1G19110.1); Has 1407 Blast hits to 1406 proteins in 307 species: Archae - 6; Bacteria - 522; Metazoa - 484; Fungi - 59; Plants - 110; Viruses - 0; Other Eukaryotes - 226 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:27295336-27298556 | Reverse length=756
E-Value1E-31
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.5274917374194
Replicate 23.081395189597
Replicate 31.854576812876
Condition 2: 8 Hour
Replicate 11.787043881324
Replicate 22.6246302873422
Replicate 32.2625760027634
Condition 3: 24 Hour
Replicate 14.8815382101886
Replicate 24.1782445922875
Replicate 31.9726738640873


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_300486.p1 GENE.S_Transcript_300486~~S_Transcript_300486.p1 ORF type:5prime_partial len:179 (+),score=20.18 S_Transcript_300486:2-538(+)
TCAGTTGTTCTTTCAAATATTGAAGTGGACTGCTTCAATCATGTTAAATCACTTACGTTATATCCATCTACTATTCAAGATCTTTCAAGTGGATGTCCAGTGATAGTGTCAGGAAGATGTCAAGGGAAGTTACCAGAGACTGTGACATTACGTGGCATCTTGGCAGACATGAGTAAATTTACAACAGACCTGAAAATACAGAAGGCAAAAGACATACCTCTAGACAAGGTATTTGCACAGAGACAGATTGATGTACTCACAGCAGAAGCATGGTTTACAGGAACCAAGGAAATTGAGAAGCAGGTCACAGAGATTAGTATGCAGACAGGAGTTCCGTCAGAATATACTCGAATGATTCTGGTTCATGCAGACTCTGAGGATCAAGAACAGGATTCCATTACGGTACAAGGGGTATGTACATTGAGAGTGCAATTCCTAGGAAAATTCTACAATGGCCACCAATTTTTGGTAGCTATTGAAACTTTTAATCTAAAACGTTCACTTTTAAATGATTTAATCACAACCATTCATAATTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_300486.p1 GENE.S_Transcript_300486~~S_Transcript_300486.p1 ORF type:5prime_partial len:179 (+),score=20.18 S_Transcript_300486:2-538(+)
SVVLSNIEVDCFNHVKSLTLYPSTIQDLSSGCPVIVSGRCQGKLPETVTLRGILADMSKFTTDLKIQKAKDIPLDKVFAQRQIDVLTAEAWFTGTKEIEKQVTEISMQTGVPSEYTRMILVHADSEDQEQDSITVQGVCTLRVQFLGKFYNGHQFLVAIETFNLKRSLLNDLITTIHN*

Click here to download the sequence:
Link to NCBI Protein BLAST