Transcript Information: S_Transcript_300953.p3


Annotated TAIR IDAT5G48050.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:19472661-19473770 | Reverse length=369
E-Value4E-05
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20.32929536653007
Replicate 30.09175490588856
Condition 2: 8 Hour
Replicate 10
Replicate 20.22260545910176
Replicate 30.31814697917883
Condition 3: 24 Hour
Replicate 10.21736202478203
Replicate 20.45102112589746
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_300953.p3 GENE.S_Transcript_300953~~S_Transcript_300953.p3 ORF type:complete len:201 (+),score=22.20,UBN2|PF14223.2|3.3e-13,UBN2_2|PF14227.2|3.4e-08 S_Transcript_300953:205-807(+)
ATGGCTCATTCGTTGGAACTCAAACATGCTCTTAATAAGGTAAGAAGACAATCTAATCAGTCTATGGAGTCATATTTGCGTGAAATCAAGGTCCTTGTTGACAATTTAGCTTCTATTCGCAATCCTGTATCGAACCATGAATTAATTGAAACTGTAAGTTTTGGTCTCGATAGTGAATATGACTCTTTTCTGACTGCGATATCACAATTCTTGGACACTTTGAGTTTTGATGATCTTCGTAGTAGATTAATTATTTTTGAGGGACGGTTGAAATATTTGCGAGAACGTGATACTGGTACTACTACCCATCTAGCCTTGGCCGTATCTTTGGTTCAAGGTGGTGGGACTTCTTCCTCTGACAAGTCCACACCCATCACTTCATCAAATGCATCATCAACTTGGTCCAATAGCAAAGGCGACAATTCTTGGCGTAATAACACTAGACATGGCCGCGGGGGCCGTAACAATAGAAATGGACGTGGCCGTGGTCGTGGATCATCACAACCTGCCGCGAATAACCAGGCAGCTGCCCAACAGGCCGTAGCATCAGTACCCCCTCGACAACAAATGGTATCTTGCCTAATCCTGGACCAACTGCAGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_300953.p3 GENE.S_Transcript_300953~~S_Transcript_300953.p3 ORF type:complete len:201 (+),score=22.20,UBN2|PF14223.2|3.3e-13,UBN2_2|PF14227.2|3.4e-08 S_Transcript_300953:205-807(+)
MAHSLELKHALNKVRRQSNQSMESYLREIKVLVDNLASIRNPVSNHELIETVSFGLDSEYDSFLTAISQFLDTLSFDDLRSRLIIFEGRLKYLRERDTGTTTHLALAVSLVQGGGTSSSDKSTPITSSNASSTWSNSKGDNSWRNNTRHGRGGRNNRNGRGRGRGSSQPAANNQAAAQQAVASVPPRQQMVSCLILDQLQ*

Click here to download the sequence:
Link to NCBI Protein BLAST