Transcript Information: S_Transcript_300954.p9


Annotated TAIR IDAT5G48050.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:19472661-19473770 | Reverse length=369
E-Value0.0002
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20
Replicate 30
Condition 2: 8 Hour
Replicate 10.23694878130148
Replicate 20
Replicate 30.47368550233292
Condition 3: 24 Hour
Replicate 10.48544185534654
Replicate 20.50364025725216
Replicate 30.28024493783462


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_300954.p9 GENE.S_Transcript_300954~~S_Transcript_300954.p9 ORF type:complete len:90 (+),score=9.46,UBN2|PF14223.2|5.5e-14,UBN2_2|PF14227.2|1.1e-07 S_Transcript_300954:196-465(+)
ATGGCTCGTTTGTTTGAACTTAAAGGTGCTCTTAATGATGTTCGCAAACTTTCTACTCAGTCCATGGAGTCATATCTACGTGATATTAAGGTTATTGCTGATAATTTAGCATCTATTTGTAGTCCCATATCGAACCGTGAATTGATTGAAACTGTAATTTTTGGTCTCGATAGTGACTATAACTATTTTGTAACTGCTATATCACAATTCATGGACACATTGAGTTTCGATGATCTTCATAGTAGATTAATTATTTTTGAGCAACAATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_300954.p9 GENE.S_Transcript_300954~~S_Transcript_300954.p9 ORF type:complete len:90 (+),score=9.46,UBN2|PF14223.2|5.5e-14,UBN2_2|PF14227.2|1.1e-07 S_Transcript_300954:196-465(+)
MARLFELKGALNDVRKLSTQSMESYLRDIKVIADNLASICSPISNRELIETVIFGLDSDYNYFVTAISQFMDTLSFDDLHSRLIIFEQQ*

Click here to download the sequence:
Link to NCBI Protein BLAST