Transcript Information: S_Transcript_30136.p1


Annotated TAIR IDAT5G03940.1
Annotated Gene Namechloroplast signal recognition particle 54 kDa subunit
Annotated Gene Symbol(s)FFC, 54CP, CPSRP54, SRP54CP
Annotation TypeOrtholog
Chromosome Positionchr5:1060265-1063257 | Reverse length=564
E-Value3.9e-314
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 1148.49685064214
Replicate 2147.73642243635
Replicate 3174.9178250429
Condition 2: 8 Hour
Replicate 1226.58227211954
Replicate 2233.62269022214
Replicate 3235.10343721258
Condition 3: 24 Hour
Replicate 1174.00056502577
Replicate 2167.65712001183
Replicate 3178.52478305496


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_30136.p1 GENE.S_Transcript_30136~~S_Transcript_30136.p1 ORF type:complete len:576 (+),score=135.08,SRP54|PF00448.18|5e-76,SRP_SPB|PF02978.15|1.1e+03,SRP_SPB|PF02978.15|1.6e+04,SRP_SPB|PF02978.15|3.8e-24,SRP54_N|PF02881.15|4.4e-19,SRP54_N|PF02881.15|1.7e+03,SRP54_N|PF02881.15|1e+04,CbiA|PF01656.19|6e-06,CbiA|PF01656.19|2.9e+03 S_Transcript_30136:365-2092(+)
ATGGAAGCACTCCATTTTCAACTACCAATAACAACTTCCGGCCAAATGTCCTCATCACAACATTCATATTCCTCCCTCTCTTCAGCCATAAACCTCCCCACTAAAACACCCAACAATTGTTCTTCCTCCTCATTCACTGGCTCCACCCTCGCCATCGGTTTCTCGTCCCGTAGCTCCTTCACTAGGGAATTATGGAGAGTCGTGAATTCGAAGGCGATTAGCACTGTGAGAAGAGAGATGAGAGGATTAATTAGGGCTGAGATGTTTGGGCAGCTTACTACCGGCCTTGAAGCTGCTTGGTCTAAGCTCAAAGGCCAAGAGGTTCTGACAAACGAGAACATTGCGGAACCCATGCGAGATATACGAAGAGCTCTCTTAGAAGCCGATGTGAGCCTTCCAGTTGTAAGAAGATTTGTTCAATCTGTAACCGACCAGGCTGTCGGAGTTGGAGTTATTAAAGGAGTGAGACCGGATCAGCAATTAGTCAAAATTGTGAATGATGAACTCGTGAAGCTAATGGGGGGAGAGGTTTCTGAGCTTGTATTCTCAAAATCTGGACCGACAATAATATTACTTGCAGGACTTCAAGGTGTTGGAAAGACAACAGTGTCTGCGAAGTTGGCTTTTTATCTTAAGAAGCTGGGGAAGAGTTGCATGCTTGTTGCGGGAGATGTGTACAGACCTGCAGCAATTGACCAACTTGTGATTCTCGGACAACAGGTGGATGTGCCTGTTTACACGGCAGGTACTGATGTTAAACCTGCAGAGATTGCTAAGCAAGGCATCGCAGAGGCCAAAAAGAAAAATATTGACGTAATCATAGTGGATACAGCTGGGAGGCTTCAGATTGATAAGGCTATGATGGATGAGTTAAAAGAGGTGAAGCAGGCAGTGAATCCTACCGAAGTTTTGCTTGTTGTAGATGCAATGACTGGTCAAGAAGCAGCAGCTTTGGTCACCACTTTCAACATGGAGATAGGTATTACGGGTGCCATCTTAACAAAACTAGATGGAGATTCTAGAGGTGGAGCAGCTCTGAGTGTCAAAGAGGTTTCAGGAAAGCCAATCAAACTTGTAGGGCGAGGGGAACGGATGGAGGACCTTGAGCCTTTCTATCCTGATCGTATGGCAGGACGCATCTTGGGGATGGGAGATGTTCTTTCTTTTGTTGAGAAAGCACAAGAAGTTATGAAACAAGAAGAAGCAGAAGAACTTCAGAAAAAGATAATGAGTGCAAAGTTCGACTTCAATGACTTCCTGAAGCAGACTCGTGCAGTTGCACAGATGGGTTCCATGAGCCGTGTTATCGGTATGATCCCAGGCATGGCAAAGGTGACTCCCGCACAAATTCGAGAAGCAGAAAAGAGCCTGAAGTTCATGGAATCAATGATTGAAGTGATGACTCCAGAGGAGAGAGAGCAGCCAGAACTCTTGGCTGAATCTCCTGCAAGAAGAAAAAGAATTGCCCAAGAGTCGGGGAAAACTGAGCAGCAGGTTAGTCAACTTGTTGCTCAACTTTTTCAAATGCGTGCACGCATGAAGAATTTGATGGGTGTTATGCAAGGGGGGTCTATACCAACCCTCAGCAATCTCGAGGAGGCCCTCAAGTCTGAGGAAAAGGCTCCTCCTGGAACTGCGAGGAGAAAGAAAAGAGGGGTGTCAAGAAAGCAATATGCAGATTCAGGTTCATCCAGACCAAGTCCTCGTGGTTTCGGGTCAAGTAACTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_30136.p1 GENE.S_Transcript_30136~~S_Transcript_30136.p1 ORF type:complete len:576 (+),score=135.08,SRP54|PF00448.18|5e-76,SRP_SPB|PF02978.15|1.1e+03,SRP_SPB|PF02978.15|1.6e+04,SRP_SPB|PF02978.15|3.8e-24,SRP54_N|PF02881.15|4.4e-19,SRP54_N|PF02881.15|1.7e+03,SRP54_N|PF02881.15|1e+04,CbiA|PF01656.19|6e-06,CbiA|PF01656.19|2.9e+03 S_Transcript_30136:365-2092(+)
MEALHFQLPITTSGQMSSSQHSYSSLSSAINLPTKTPNNCSSSSFTGSTLAIGFSSRSSFTRELWRVVNSKAISTVRREMRGLIRAEMFGQLTTGLEAAWSKLKGQEVLTNENIAEPMRDIRRALLEADVSLPVVRRFVQSVTDQAVGVGVIKGVRPDQQLVKIVNDELVKLMGGEVSELVFSKSGPTIILLAGLQGVGKTTVSAKLAFYLKKLGKSCMLVAGDVYRPAAIDQLVILGQQVDVPVYTAGTDVKPAEIAKQGIAEAKKKNIDVIIVDTAGRLQIDKAMMDELKEVKQAVNPTEVLLVVDAMTGQEAAALVTTFNMEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMKQEEAEELQKKIMSAKFDFNDFLKQTRAVAQMGSMSRVIGMIPGMAKVTPAQIREAEKSLKFMESMIEVMTPEEREQPELLAESPARRKRIAQESGKTEQQVSQLVAQLFQMRARMKNLMGVMQGGSIPTLSNLEEALKSEEKAPPGTARRKKRGVSRKQYADSGSSRPSPRGFGSSN*

Click here to download the sequence:
Link to NCBI Protein BLAST