Transcript Information: S_Transcript_301379.p1


Annotated TAIR IDAT5G40690.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G41730.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:16290770-16291402 | Forward length=210
E-Value4.4E-50
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.2042082006869
Replicate 20.39932650782832
Replicate 31.0014155339512
Condition 2: 8 Hour
Replicate 10.86845480929501
Replicate 20.20246016868531
Replicate 30.7716143929405
Condition 3: 24 Hour
Replicate 10.29653687996282
Replicate 20.61530710162029
Replicate 30.45650759104283


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_301379.p1 GENE.S_Transcript_301379~~S_Transcript_301379.p1 ORF type:complete len:221 (+),score=30.85 S_Transcript_301379:70-663(+)
ATGAAGAGAGAAGGTCGTCAACACGGAATGGTCCGAACCTTCCATGTTCTACCGGCCCCATTGAACCCGAGGCCCCATACCCGAATAGTCAATCGGGTTGATTCCCCACCCACTGCCGGAATATTCACAAAGGTCTCTCGTAAGCCCACCAACCACTCTAAGTTCACCGGCAAGTGCGACCGTCCTAACTGTACAGCCTGCCATATACATGCTGGTTGCAAGTCTAAACACAAGGCTAAAGGCACCCAGAAAATTAGATCCTCCGACGCCGTTTTGAATTACAATCATGTCACTTGGCAGGTCATGGATCACTTTTCCGGCCCCACTCGTAAGCTTCCGGTTTCTGGGTACTCCGCTTCTCGGATCCTGGACGAGCTTGCCAACGATTATATGGGCTGTCGTGATGATGATGAGGAGTTATATGAAAATGCAACCAGTGAAGATCATGATCATGATCATGAGAATAAGCAAGAGCAAATTCAGCAGGATGATGTTGGGATTGATGATGGTGAAATGGATTACTATGATGTCATGGTTGTGTGGGATCCAGTTGATGGGGATGAGGGTTGGTCTATTGTTGGAGGAGTTATGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_301379.p1 GENE.S_Transcript_301379~~S_Transcript_301379.p1 ORF type:complete len:221 (+),score=30.85 S_Transcript_301379:70-663(+)
MKREGRQHGMVRTFHVLPAPLNPRPHTRIVNRVDSPPTAGIFTKVSRKPTNHSKFTGKCDRPNCTACHIHAGCKSKHKAKGTQKIRSSDAVLNYNHVTWQVMDHFSGPTRKLPVSGYSASRILDELANDYMGCRDDDEELYENATSEDHDHDHENKQEQIQQDDVGIDDGEMDYYDVMVVWDPVDGDEGWSIVGGVM*

Click here to download the sequence:
Link to NCBI Protein BLAST