Transcript Information: S_Transcript_301418.p1


Annotated TAIR IDAT2G44880.1
Annotated Gene NamePentatricopeptide repeat (PPR-like) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr2:18505239-18506906 | Forward length=555
E-Value1.4E-179
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.47102657053417
Replicate 20.24405740660968
Replicate 30.16321005383717
Condition 2: 8 Hour
Replicate 10.61334087195294
Replicate 20.79192384565404
Replicate 31.0374970073221
Condition 3: 24 Hour
Replicate 10.14498816476058
Replicate 20.1504235281616
Replicate 30.22320393278864


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_301418.p1 GENE.S_Transcript_301418~~S_Transcript_301418.p1 ORF type:complete len:452 (+),score=92.39,PPR|PF01535.16|0.00098,PPR|PF01535.16|3.1e-05,PPR|PF01535.16|2.7e-06,PPR|PF01535.16|2.2e-06,PPR|PF01535.16|9.8e-08,PPR|PF01535.16|0.031,PPR|PF01535.16|3.8e-06,PPR|PF01535.16|0.07,PPR|PF01535.16|0.00013,PPR|PF01535.16|2.7e+02,PPR|PF01535.16|68,PPR_2|PF13041.2|0.26,PPR_2|PF13041.2|0.0017,PPR_2|PF13041.2|1e-06,PPR_2|PF13041.2|1e-06,PPR_2|PF13041.2|3.9e-08,PPR_2|PF13041.2|1.3e+02,PPR_2|PF13041.2|2.2e-07,PPR_2|PF13041.2|3.7,PPR_2|PF13041.2|0.026,PPR_2|PF13041.2|3.6e+03,PPR_2|PF13041.2|5.7e+03,PPR_1|PF12854.3|4.6,PPR_1|PF12854.3|0.00018,PPR_1|PF12854.3|0.0017,PPR_1|PF12854.3|1.6e-08,PPR_1|PF12854.3|0.0002,PPR_1|PF12854.3|8,PPR_1|PF12854.3|1,PPR_1|PF12854.3|5.7e-05,PPR_1|PF12854.3|4.6e+03,PPR_3|PF13812.2|1.5e+02,PPR_3|PF13812.2|0.012,PPR_3|PF13812.2|0.0076,PPR_3|PF13812.2|0.00061,PPR_3|PF13812.2|0.04,PPR_3|PF13812.2|54,PPR_3|PF13812.2|1.4e+02,PPR_3|PF13812.2|12,PPR_3|PF13812.2|0.034,PPR_3|PF13812.2|9.1e+02,TPR_19|PF14559.2|0.0012,TPR_19|PF14559.2|1.5e+04,TPR_19|PF14559.2|1.6e+04,TPR_19|PF14559.2|6.5e+02,TPR_19|PF14559.2|86,TPR_19|PF14559.2|16,TPR_19|PF14559.2|1.6e+04,SNN_transmemb|PF09049.6|7.7e-06 S_Transcript_301418:32-1357(+)
ATGGTTGACATGTATGGTAAGATGTGGGATATGGGTTCTGCCCGGAAGGTGTTCGATGAAATGCCTGAGAGAAGTGTAGTATCTTGGACTGCTTTAGTTTGTGGGTATGCTATGACAGGCGATGTTGACAATGCCAGGGACTACTTTGATCAAATGCCTGACAAAGATACATCAGCTTATAATGCTATGATTGATGCATATATTAAAGTAAATGACTTGGATTCAGCTAGAAGCTTGTTTGATGTGATGCCAGAGAGGAATGTGATCTCTTGGACAACTTTGATTTCAGGGTTTTGTAACAATAATGATATTCAGTCAGCTATGCTGCTATTTGAGGCTATGCCTGAGAAGAATCTTGTTTCTTGGAACGCGATGCTTGGTGGGTATTGTCGAAACAAACAACCTCATGATGCTTTGAAGTTGTTCTATGAATTACAATCGAAAACAGTGCTTGAAGCCGATGAAGTCACCATTATCAGCATTCTACCAGCAATAGCGGATTTGGGTGCATTGGATTTAGGATGTTGGGTTCATGAGTATGTCAAGAGGAAAAGACTAGACAAAAGGATAAAGATAAGCACCTCGTTGGTAGATATGTATGCAAAATGTGGTGAAATCACCAAATCAATGCAAGTGTTTGAAGAGATTCCTGAAAAGATAATATCTTCTTGGAATGCCATTATACATGGGCTTGCAGTTAATGGGTATGGTAAAGAGGCATTGGATATTTTTCATGGCATGATTGGTAGGGGATATGCACCAAATGGAATCACAATGGTTGGTGTTTTGTCTGCTTGTAGTCATAATGGTTTGGTTGAGCAGGGAAAGAAATGGTTCGAGTCAATGGAAATTTTTGGACTTACCCCACAAATTGAACATTATGGTTGTATGATAGACCTTTTTGGTAGGGTAGGAAACTTGGATGAAGCTGAGAAATTATTAGAATCTATGCCATTTGAGGTTAATGAGATAATTATTAGTTCCTTCCTTTCAGCTTGTGTGAATTGGAATGATCTGTTTCGGGCTGAGAGAGTATTAAATCAAGCAGTTCAAATGGACCCATATAATGCGGGGAACTATGTTCTACTGAGGAACTTGTATGCCATGGAACGGAGATGGGAAGAAGTGAAGAAAATAAAGGGACTCATGAGGACGAGTGGTGCAAAAAAAGAAGCTGGTTCGAGTGCTATTGAAGTTAATGGTGTGTTATGGGAGTTTATATCAGGAGGTACAATGCATCCTCAGACGAAGGATATAATACTATTATTAAGGCAGCTCGAAACACACTTGAAGGGGATGGAGGAGTTAAACACAAAACTGCAGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_301418.p1 GENE.S_Transcript_301418~~S_Transcript_301418.p1 ORF type:complete len:452 (+),score=92.39,PPR|PF01535.16|0.00098,PPR|PF01535.16|3.1e-05,PPR|PF01535.16|2.7e-06,PPR|PF01535.16|2.2e-06,PPR|PF01535.16|9.8e-08,PPR|PF01535.16|0.031,PPR|PF01535.16|3.8e-06,PPR|PF01535.16|0.07,PPR|PF01535.16|0.00013,PPR|PF01535.16|2.7e+02,PPR|PF01535.16|68,PPR_2|PF13041.2|0.26,PPR_2|PF13041.2|0.0017,PPR_2|PF13041.2|1e-06,PPR_2|PF13041.2|1e-06,PPR_2|PF13041.2|3.9e-08,PPR_2|PF13041.2|1.3e+02,PPR_2|PF13041.2|2.2e-07,PPR_2|PF13041.2|3.7,PPR_2|PF13041.2|0.026,PPR_2|PF13041.2|3.6e+03,PPR_2|PF13041.2|5.7e+03,PPR_1|PF12854.3|4.6,PPR_1|PF12854.3|0.00018,PPR_1|PF12854.3|0.0017,PPR_1|PF12854.3|1.6e-08,PPR_1|PF12854.3|0.0002,PPR_1|PF12854.3|8,PPR_1|PF12854.3|1,PPR_1|PF12854.3|5.7e-05,PPR_1|PF12854.3|4.6e+03,PPR_3|PF13812.2|1.5e+02,PPR_3|PF13812.2|0.012,PPR_3|PF13812.2|0.0076,PPR_3|PF13812.2|0.00061,PPR_3|PF13812.2|0.04,PPR_3|PF13812.2|54,PPR_3|PF13812.2|1.4e+02,PPR_3|PF13812.2|12,PPR_3|PF13812.2|0.034,PPR_3|PF13812.2|9.1e+02,TPR_19|PF14559.2|0.0012,TPR_19|PF14559.2|1.5e+04,TPR_19|PF14559.2|1.6e+04,TPR_19|PF14559.2|6.5e+02,TPR_19|PF14559.2|86,TPR_19|PF14559.2|16,TPR_19|PF14559.2|1.6e+04,SNN_transmemb|PF09049.6|7.7e-06 S_Transcript_301418:32-1357(+)
MVDMYGKMWDMGSARKVFDEMPERSVVSWTALVCGYAMTGDVDNARDYFDQMPDKDTSAYNAMIDAYIKVNDLDSARSLFDVMPERNVISWTTLISGFCNNNDIQSAMLLFEAMPEKNLVSWNAMLGGYCRNKQPHDALKLFYELQSKTVLEADEVTIISILPAIADLGALDLGCWVHEYVKRKRLDKRIKISTSLVDMYAKCGEITKSMQVFEEIPEKIISSWNAIIHGLAVNGYGKEALDIFHGMIGRGYAPNGITMVGVLSACSHNGLVEQGKKWFESMEIFGLTPQIEHYGCMIDLFGRVGNLDEAEKLLESMPFEVNEIIISSFLSACVNWNDLFRAERVLNQAVQMDPYNAGNYVLLRNLYAMERRWEEVKKIKGLMRTSGAKKEAGSSAIEVNGVLWEFISGGTMHPQTKDIILLLRQLETHLKGMEELNTKLQ*

Click here to download the sequence:
Link to NCBI Protein BLAST